[HTML][HTML] Systems biology and multi-omics integration: viewpoints from the metabolomics research community

FR Pinu, DJ Beale, AM Paten, K Kouremenos… - Metabolites, 2019 - mdpi.com
The use of multiple omics techniques (ie, genomics, transcriptomics, proteomics, and
metabolomics) is becoming increasingly popular in all facets of life science. Omics …

Metabolic flux balance analysis during lactate and glucose concomitant consumption in HEK293 cell cultures

I Martínez‐Monge, J Albiol, M Lecina… - Biotechnology and …, 2019 - Wiley Online Library
At early stages of the exponential growth phase in HEK293 cell cultures, the tricarboxylic
acid cycle is unable to process all the amount of NADH generated in the glycolysis pathway …

Glycerol metabolism of Pichia pastoris (Komagataella spp.) characterised by 13C-based metabolic flux analysis

M Tomàs-Gamisans, ASR Ødum, M Workman… - New biotechnology, 2019 - Elsevier
Metabolic flux analysis based on 13 C-derived constraints has proved to be a powerful
method for quantitative physiological characterisation of one of the most extensively used …

[HTML][HTML] Metabolic switches from quiescence to growth in synchronized Saccharomyces cerevisiae

J Zhang, K Martinez-Gomez, E Heinzle, SA Wahl - Metabolomics, 2019 - Springer
Introduction The switch from quiescence (G0) into G1 and cell cycle progression critically
depends on specific nutrients and metabolic capabilities. Conversely, metabolic networks …

Concomitant consumption of glucose and lactate: A novel batch production process for CHO cells

I Martínez-Monge, P Comas, J Triquell… - Biochemical …, 2019 - Elsevier
The rapid consumption of large quantities of glucose in conventional CHO batch processes
yields large quantities of lactate, leading to the inhibition of cell growth. We have observed …

Multiscale dynamic modeling and simulation of a biorefinery

T Ploch, X Zhao, J Hüser, E von Lieres… - Biotechnology and …, 2019 - Wiley Online Library
A biorefinery comprises a variety of process steps to synthesize products from sustainable
natural resources. Dynamic plant‐wide simulation enhances the process understanding …

Propagation of oscillating chemical signals through reaction networks

R Roszak, MD Bajczyk, EP Gajewska… - Angewandte Chemie …, 2019 - Wiley Online Library
Akin to electronic systems that can tune to and process signals of select frequencies,
systems/networks of chemical reactions also “propagate” time‐varying concentration inputs …

[HTML][HTML] Visual FTBL Generator: Visual Generation Tool for 13C-FLUX File

G Yu, B Rui, X Fan, X Xie - Brazilian Archives of Biology and …, 2019 - SciELO Brasil
Abstract 13C metabolic flux analysis (13C-MFA) has achieved increasing significance in
quantitative metabolic system analysis in recent years. In 13C metabolic flux analysis, 13C …

Analysis of metabolic heterogeneity over cell division cycle in non-synchronized yeast a 13c based experimental-computational approach

IVM Santos - 2019 - estudogeral.uc.pt
There is increasing evidence of extensive metabolic changes over the division cycle of
eukaryotic cells. However, quantitative information about how flux redistributes in distinct …

Novel Applications of Machine Learning in Bioinformatics

Y Zhang - 2019 - uknowledge.uky.edu
Technological advances in next-generation sequencing and biomedical imaging have led to
a rapid increase in biomedical data dimension and acquisition rate, which is challenging the …