Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping …

O Wang, R Chin, X Cheng, MKY Wu, Q Mao… - Genome …, 2019 - genome.cshlp.org
Here, we describe single-tube long fragment read (stLFR), a technology that enables
sequencing of data from long DNA molecules using economical second-generation …

[HTML][HTML] Systematic comparison of germline variant calling pipelines cross multiple next-generation sequencers

J Chen, X Li, H Zhong, Y Meng, H Du - Scientific reports, 2019 - nature.com
The development and innovation of next generation sequencing (NGS) and the subsequent
analysis tools have gain popularity in scientific researches and clinical diagnostic …

[HTML][HTML] Comparative analysis of sequencing technologies for single-cell transcriptomics

KN Natarajan, Z Miao, M Jiang, X Huang, H Zhou, J Xie… - Genome Biology, 2019 - Springer
Single-cell RNA-seq technologies require library preparation prior to sequencing. Here, we
present the first report to compare the cheaper BGISEQ-500 platform to the Illumina HiSeq …

[HTML][HTML] Impact of sequencing depth and technology on de novo RNA-Seq assembly

J Patterson, EJ Carpenter, Z Zhu, D An, X Liang… - BMC genomics, 2019 - Springer
Background RNA-Seq data is inherently nonuniform for different transcripts because of
differences in gene expression. This makes it challenging to decide how much data should …

[HTML][HTML] Comparison of the MGISEQ-2000 and Illumina HiSeq 4000 sequencing platforms for RNA sequencing

SA Jeon, JL Park, JH Kim, JH Kim, YS Kim… - Genomics & …, 2019 - ncbi.nlm.nih.gov
Currently, Illumina sequencers are the globally leading sequencing platform in the next-
generation sequencing market. Recently, MGI Tech launched a series of new sequencers …

[HTML][HTML] Salt-inducible kinases dictate parathyroid hormone 1 receptor action in bone development and remodeling

S Nishimori, MJ O'Meara, CD Castro… - The Journal of …, 2019 - Am Soc Clin Investig
The parathyroid hormone 1 receptor (PTH1R) mediates the biologic actions of parathyroid
hormone (PTH) and parathyroid hormone–related protein (PTHrP). Here, we showed that …

MicroRNA profiling from dried blood samples

C Diener, V Galata, A Keller… - Critical reviews in clinical …, 2019 - Taylor & Francis
MicroRNAs (miRNAs) hold great promise as blood-borne and circulating biomarkers for
numerous diseases. However, the reliability of such liquid biopsies is particularly impacted …

Dean flow assisted single cell and bead encapsulation for high performance single cell expression profiling

L Li, P Wu, Z Luo, L Wang, W Ding, T Wu, J Chen… - ACS …, 2019 - ACS Publications
Droplet microfluidics-based platform (Drop-seq) has been shown to be a powerful tool for
single cell expression profiling. Nevertheless, this platform required the simultaneous …

Integrated lipidomics and transcriptomics characterization upon aging-related changes of lipid species and pathways in human bone marrow mesenchymal stem cells

X Lu, Y Chen, H Wang, Y Bai, J Zhao… - Journal of proteome …, 2019 - ACS Publications
Aberrant differentiations of bone mesenchymal stem cells (BMSCs) have proved to be
associated with the occurrence of senile osteoporosis. However, mechanisms of this …

[HTML][HTML] Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

P Wang, Y Yang, H Shi, Y Wang, F Ren - BMC genomics, 2019 - Springer
Abstract Background Chinese wild grapevine (Vitis amurensis) has remarkable cold stress
tolerance, exceeding that of the common cultivated grapevine (Vitis vinifera L.). Result Here …