Clustering homologous sequences based on their similarity is a problem that appears in
many bioinformatics applications. The fact that sequences cluster is ultimately the result of …

HIV molecular epidemiology for research and public health pose significant ethical issues
that continue to evolve with improving technology, increased sampling and a changing legal …

Analysis of HIV genetic sequence can resolve viral transmission patterns between risk
groups at unprecedented scales and levels of detail. Future research should focus on …

In Western Europe, the HIV-1 epidemic among men who have sex with men (MSM) is
dominated by subtype B. However, recently, other genetic forms have been reported to …

Background We evaluated use of phylogenetic methods to predict the direction of human
immunodeficiency virus (HIV) transmission. Methods For 33 pairs of HIV-infected patients …

ABSTRACT HIV-1 non-B infections have been increasing in Europe for several years. In
Germany, subtype A belongs to the most abundant non-B subtypes showing an increasing …

Background: For people living with HIV, major guidelines in high-income countries
recommend testing for transmitted drug resistance (TDR) to guide the choice of first-line …

Objectives: Molecular epidemiology is applied to various aspects of HIV transmission
analyses. With ultradeep sequencing (UDS), in-depth characterization of transmission …

Factors influencing HIV-1 phylogenetic clustering : Current Opinion in HIV and AIDS Factors
influencing HIV-1 phylogenetic clustering : Current Opinion in HIV and AIDS Log in or Register …

Predominantly heterosexual HIV-1 epidemics like those in sub-Saharan Africa continue to
have high HIV incidence in young people. We used a stochastic, agent-based model for age …