GenASM: A high-performance, low-power approximate string matching acceleration framework for genome sequence analysis
Genome sequence analysis has enabled significant advancements in medical and scientific
areas such as personalized medicine, outbreak tracing, and the understanding of evolution …
areas such as personalized medicine, outbreak tracing, and the understanding of evolution …
Accelerating genome analysis: A primer on an ongoing journey
Genome analysis fundamentally starts with a process known as read mapping, where
sequenced fragments of an organism's genome are compared against a reference genome …
sequenced fragments of an organism's genome are compared against a reference genome …
SneakySnake: a fast and accurate universal genome pre-alignment filter for CPUs, GPUs and FPGAs
Abstract Motivation We introduce SneakySnake, a highly parallel and highly accurate pre-
alignment filter that remarkably reduces the need for computationally costly sequence …
alignment filter that remarkably reduces the need for computationally costly sequence …