Studying substrate consumption in nutrient-rich conditions is challenging because often the
growth medium includes undefined components like yeast extract or peptone. For clear and …

Background Stable isotope tracing has become an invaluable tool for probing the
metabolism of biological systems. However, data analysis and visualization from metabolic …

One approach for elucidating strain-to-strain metabolic differences is the use of genome-
scale metabolic models (GSMMs). To date GSMMs have not focused on the industrially …

Abstract α-Ketoglutarate (αKG) is a metabolite of the tricarboxylic acid cycle, important for
biomass synthesis and a precursor for biotechnological products like 1, 4-butanediol. In the …

Visualization plays a central role in the analysis of biochemical network models to identify
patterns that arise from reaction dynamics and perform model exploratory analysis. To …

The ocean, which is called the “mother of origin of life,” is also the source of structurally
unique natural products that are mainly accumulated in living organisms. Several of these …

Lemna species have been used in the food, feed, and pharmaceutical industries, as they are
inexpensive sources of proteins, starches, and fatty acids. In this study, we treated L …