High-throughput and single-cell T cell receptor sequencing technologies

JA Pai, AT Satpathy - Nature methods, 2021 - nature.com
T cells express T cell receptors (TCRs) composed of somatically recombined TCRα and
TCRβ chains, which mediate recognition of major histocompatibility complex (MHC)–antigen …

Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling

J Trück, A Eugster, P Barennes, CM Tipton… - Elife, 2021 - elifesciences.org
Use of adaptive immune receptor repertoire sequencing (AIRR-seq) has become
widespread, providing new insights into the immune system with potential broad clinical and …

Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases

P Barennes, V Quiniou, M Shugay, ES Egorov… - Nature …, 2021 - nature.com
Monitoring the T cell receptor (TCR) repertoire in health and disease can provide key
insights into adaptive immune responses, but the accuracy of current TCR sequencing …

The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires

M Pavlović, L Scheffer, K Motwani, C Kanduri… - Nature Machine …, 2021 - nature.com
Adaptive immune receptor repertoires (AIRR) are key targets for biomedical research as
they record past and ongoing adaptive immune responses. The capacity of machine …

The future of blood testing is the immunome

RA Arnaout, ETL Prak, N Schwab, F Rubelt… - Frontiers in …, 2021 - frontiersin.org
It is increasingly clear that an extraordinarily diverse range of clinically important conditions—
including infections, vaccinations, autoimmune diseases, transplants, transfusion reactions …

Machine learning analysis of naïve B-cell receptor repertoires stratifies celiac disease patients and controls

O Shemesh, P Polak, KEA Lundin, LM Sollid… - Frontiers in …, 2021 - frontiersin.org
Celiac disease (CeD) is a common autoimmune disorder caused by an abnormal immune
response to dietary gluten proteins. The disease has high heritability. HLA is the major …

[HTML][HTML] T-Cell Receptor Repertoire Analysis with Computational Tools—An Immunologist's Perspective

M Arunkumar, CE Zielinski - Cells, 2021 - mdpi.com
Over the last few years, there has been a rapid expansion in the application of information
technology to biological data. Particularly the field of immunology has seen great strides in …

[PDF][PDF] the Adaptive Immune Receptor Repertoire Community (2021) The Future of Blood Testing Is the Immunome

RA Arnaout, ETL Prak, N Schwab… - Front. Immunol. 12 …, 2021 - scholar.archive.org
It is increasingly clear that an extraordinarily diverse range of clinically important conditions-
including infections, vaccinations, autoimmune diseases, transplants, transfusion reactions …

Decombinator V4: an improved AIRR-C compliant-software package for T-cell receptor sequence annotation?

T Peacock, JM Heather, T Ronel, B Chain - Bioinformatics, 2021 - academic.oup.com
Motivation Analysis of the T-cell receptor repertoire is rapidly entering the general toolbox
used by researchers interested in cellular immunity. The annotation of T-cell receptors …

Dual UMIs and dual barcodes with minimal PCR amplification removes artifacts and acquires accurate antibody repertoire

Q Wang, H Zeng, Y Zhu, M Wang, Y Zhang… - Frontiers in …, 2021 - frontiersin.org
Antibody repertoire sequencing (Rep-seq) has been widely used to reveal repertoire
dynamics and to interrogate antibodies of interest at single nucleotide-level resolution …