Development of a TSR-based method for protein 3-D structural comparison with its applications to protein classification and motif discovery

S Kondra, T Sarkar, V Raghavan, W Xu - Frontiers in Chemistry, 2021 - frontiersin.org
Development of protein 3-D structural comparison methods is important in understanding
protein functions. At the same time, developing such a method is very challenging. In the last …

Exploring the effectiveness of the TSR-based protein 3-D structural comparison method for protein clustering, and structural motif identification and discovery of protein …

T Sarkar, VV Raghavan, F Chen, A Riley, S Zhou… - … biology and chemistry, 2021 - Elsevier
Abstract Development of protein 3-D structural comparison methods is essential for
understanding protein functions. Some amino acids share structural similarities while others …

[图书][B] A Geometry-Based Method for Protein Structure Representation Using Triangular Spatial Relationship in 3D and Its Application Towards Clustering and Motif …

T Sarkar - 2021 - search.proquest.com
Protein 3-D structures are more functionally conserved than sequence and this claims the
need of developing a computational tool for accurate protein structure comparison at the …