The emerging landscape of spatial profiling technologies

JR Moffitt, E Lundberg, H Heyn - Nature Reviews Genetics, 2022 - nature.com
Improved scale, multiplexing and resolution are establishing spatial nucleic acid and protein
profiling methods as a major pillar for cellular atlas building of complex samples, from …

[HTML][HTML] Computational solutions for spatial transcriptomics

I Kleino, P Frolovaitė, T Suomi, LL Elo - Computational and structural …, 2022 - Elsevier
Transcriptome level expression data connected to the spatial organization of the cells and
molecules would allow a comprehensive understanding of how gene expression is …

Spateo: multidimensional spatiotemporal modeling of single-cell spatial transcriptomics

X Qiu, DY Zhu, J Yao, Z Jing, L Zuo, M Wang, KH Min… - BioRxiv, 2022 - biorxiv.org
Cells do not live in a vacuum, but in a milieu defined by cell–cell communication that can be
measured via emerging high-resolution spatial transcriptomics approaches. However …

Spatiotemporal Omics-Refining the landscape of precision medicine

J Zhang, J Yin, Y Heng, K Xie, A Chen, I Amit… - Life …, 2022 - academic.oup.com
Current streamline of precision medicine uses histomorphological and molecular
information to indicate individual phenotypes and genotypes to achieve optimal outcome of …

Resolving the gene expression maps of human first-trimester chorionic villi with spatial transcriptome

Z Liu, M Zhai, Q Zhang, T Yang, Z Wan, J Li… - Frontiers in Cell and …, 2022 - frontiersin.org
The placenta is important for fetal development in mammals, and spatial transcriptomic
profiling of placenta helps to resolve its structure and function. In this study, we described the …

The continuum of Drosophila embryonic development at single-cell resolution

D Calderon, R Blecher-Gonen, X Huang, S Secchia… - Science, 2022 - science.org
Drosophila melanogaster is a powerful, long-standing model for metazoan development and
gene regulation. We profiled chromatin accessibility in almost 1 million and gene expression …

New adventures in spatial transcriptomics

M Pour, I Yanai - Developmental Cell, 2022 - cell.com
Complex dynamic processes such as development involve the deployment of gene
regulatory pathways that transform the spatial arrangement of cells. Disentangling these …

How to make spatial maps of gene activity—down to the cellular level

M Eisenstein - 2022 - sabinai-neji.com
Under a microscope, mammalian tissues reveal their intricate and elegant architectures. But
if you look at the same tissue after tumour formation, you will see bedlam. Itai Yanai, a …

STOmics-GenX: CRISPR based approach to improve cell identity specific gene detection from spatially resolved transcriptomics

J Currenti, L Qiao, R Pai, S Gupta, C Khyriem, K Wise… - bioRxiv, 2022 - biorxiv.org
The spatial organisation of cells defines the biological functions of tissue ecosystems from
development to disease. Recently, an array of technologies have been developed to query …

An integrated microfluidic device for multiplexed imaging of spatial gene expression patterns of Drosophila embryos

H Zhu, W Shen, C Luo, F Liu - Lab on a Chip, 2022 - pubs.rsc.org
To reveal the underlying mechanism of the biological function of multicellular systems, it is
important to obtain comprehensive spatial gene expression profiles. Among the emerging …