A guide for the diagnosis of rare and undiagnosed disease: beyond the exome

S Marwaha, JW Knowles, EA Ashley - Genome medicine, 2022 - Springer
Rare diseases affect 30 million people in the USA and more than 300–400 million
worldwide, often causing chronic illness, disability, and premature death. Traditional …

Best practices for the interpretation and reporting of clinical whole genome sequencing

CA Austin-Tse, V Jobanputra, DL Perry, D Bick… - NPJ genomic …, 2022 - nature.com
Whole genome sequencing (WGS) shows promise as a first-tier diagnostic test for patients
with rare genetic disorders. However, standards addressing the definition and deployment …

Towards accurate and reliable resolution of structural variants for clinical diagnosis

Z Liu, R Roberts, TR Mercer, J Xu, FJ Sedlazeck… - Genome biology, 2022 - Springer
Structural variants (SVs) are a major source of human genetic diversity and have been
associated with different diseases and phenotypes. The detection of SVs is difficult, and a …

Whole genome sequencing for the diagnosis of neurological repeat expansion disorders in the UK: a retrospective diagnostic accuracy and prospective clinical …

K Ibañez, J Polke, RT Hagelstrom… - The Lancet …, 2022 - thelancet.com
Background Repeat expansion disorders affect about 1 in 3000 individuals and are clinically
heterogeneous diseases caused by expansions of short tandem DNA repeats. Genetic …

Whole genome sequencing delineates regulatory, copy number, and cryptic splice variants in early onset cardiomyopathy

R Lesurf, A Said, O Akinrinade, J Breckpot… - NPJ genomic …, 2022 - nature.com
Cardiomyopathy (CMP) is a heritable disorder. Over 50% of cases are gene-elusive on
clinical gene panel testing. The contribution of variants in non-coding DNA elements that …

Combining callers improves the detection of copy number variants from whole-genome sequencing

M Coutelier, M Holtgrewe, M Jäger… - European Journal of …, 2022 - nature.com
Abstract Copy Number Variants (CNVs) are deletions, duplications or insertions larger than
50 base pairs. They account for a large percentage of the normal genome variation and play …

Diverse ancestry whole-genome sequencing association study identifies TBX5 and PTK7 as susceptibility genes for posterior urethral valves

MMY Chan, O Sadeghi-Alavijeh, FM Lopes, AC Hilger… - Elife, 2022 - elifesciences.org
Posterior urethral valves (PUV) are the commonest cause of end-stage renal disease in
children, but the genetic architecture of this rare disorder remains unknown. We performed a …

Robust and accurate estimation of paralog-specific copy number for duplicated genes using whole-genome sequencing

T Prodanov, V Bansal - Nature communications, 2022 - nature.com
The human genome contains hundreds of low-copy repeats (LCRs) that are challenging to
analyze using short-read sequencing technologies due to extensive copy number variation …

Exome sequencing as a first-tier test for copy number variant detection: retrospective evaluation and prospective screening in 2418 cases

Q Testard, X Vanhoye, K Yauy, ME Naud… - Journal of Medical …, 2022 - jmg.bmj.com
Background Despite the availability of whole exome (WES) and genome sequencing (WGS),
chromosomal microarray (CMA) remains the first-line diagnostic test in most rare disorders …

[HTML][HTML] CNest: A novel copy number association discovery method uncovers 862 new associations from 200,629 whole-exome sequence datasets in the UK Biobank

T Fitzgerald, E Birney - Cell Genomics, 2022 - cell.com
Copy number variation (CNV) is known to influence human traits, having a rich history of
research into common and rare genetic disease, and although CNV is accepted as an …