Independent drug action in combination therapy: implications for precision oncology

D Plana, AC Palmer, PK Sorger - Cancer discovery, 2022 - AACR
Combination therapies are superior to monotherapy for many cancers. This advantage was
historically ascribed to the ability of combinations to address tumor heterogeneity, but …

Machine learning methods, databases and tools for drug combination prediction

L Wu, Y Wen, D Leng, Q Zhang, C Dai… - Briefings in …, 2022 - academic.oup.com
Combination therapy has shown an obvious efficacy on complex diseases and can greatly
reduce the development of drug resistance. However, even with high-throughput screens …

[HTML][HTML] Effective drug combinations in breast, colon and pancreatic cancer cells

P Jaaks, EA Coker, DJ Vis, O Edwards, EF Carpenter… - Nature, 2022 - nature.com
Combinations of anti-cancer drugs can overcome resistance and provide new treatments,.
The number of possible drug combinations vastly exceeds what could be tested clinically …

SynergyFinder plus: toward better interpretation and annotation of drug combination screening datasets

S Zheng, W Wang, J Aldahdooh… - Genomics …, 2022 - academic.oup.com
Combinatorial therapies have been recently proposed to improve the efficacy of anticancer
treatment. The SynergyFinder R package is a software used to analyze pre-clinical drug …

DeepDDS: deep graph neural network with attention mechanism to predict synergistic drug combinations

J Wang, X Liu, S Shen, L Deng… - Briefings in …, 2022 - academic.oup.com
Motivation Drug combination therapy has become an increasingly promising method in the
treatment of cancer. However, the number of possible drug combinations is so huge that it is …

Patient-specific Boolean models of signalling networks guide personalised treatments

A Montagud, J Béal, L Tobalina, P Traynard… - Elife, 2022 - elifesciences.org
Prostate cancer is the second most occurring cancer in men worldwide. To better
understand the mechanisms of tumorigenesis and possible treatment responses, we …

Big data in basic and translational cancer research

P Jiang, S Sinha, K Aldape, S Hannenhalli… - Nature Reviews …, 2022 - nature.com
Historically, the primary focus of cancer research has been molecular and clinical studies of
a few essential pathways and genes. Recent years have seen the rapid accumulation of …

A cross-study analysis of drug response prediction in cancer cell lines

F Xia, J Allen, P Balaprakash, T Brettin… - Briefings in …, 2022 - academic.oup.com
To enable personalized cancer treatment, machine learning models have been developed
to predict drug response as a function of tumor and drug features. However, most algorithm …

Multi-way relation-enhanced hypergraph representation learning for anti-cancer drug synergy prediction

X Liu, C Song, S Liu, M Li, X Zhou, W Zhang - Bioinformatics, 2022 - academic.oup.com
Motivation Drug combinations have exhibited promise in treating cancers with less toxicity
and fewer adverse reactions. However, in vitro screening of synergistic drug combinations is …

Predicting cancer drug response using parallel heterogeneous graph convolutional networks with neighborhood interactions

W Peng, H Liu, W Dai, N Yu, J Wang - Bioinformatics, 2022 - academic.oup.com
Motivation Due to cancer heterogeneity, the therapeutic effect may not be the same when a
cohort of patients of the same cancer type receive the same treatment. The anticancer drug …