Genpip: In-memory acceleration of genome analysis via tight integration of basecalling and read mapping

H Mao, M Alser, M Sadrosadati, C Firtina… - 2022 55th IEEE/ACM …, 2022 - ieeexplore.ieee.org
Nanopore sequencing is a widely-used high-throughput genome sequencing technology
that can sequence long fragments of a genome into raw electrical signals at low cost …

Exponential function computation based on DNA strand displacement circuits

Y Wang, T Mao, J Sun, P Liu - IEEE Transactions on …, 2022 - ieeexplore.ieee.org
Due to its high programmability and storage, DNA circuits have been widely used in
biological computing. In this paper, the addition, subtraction, multiplication, division, n-order …

An FPGA implementation of a portable DNA sequencing device based on RISC-V

Z Wu, K Hammad, A Beyene, Y Dawji… - 2022 20th IEEE …, 2022 - ieeexplore.ieee.org
Miniature and mobile DNA sequencers are steadily growing in popularity as effective tools
for genetics research. As basecalling algorithms continue to evolve, basecalling poses a …