Current challenges in understanding the role of enhancers in disease

JB Zaugg, P Sahlén, R Andersson… - Nature Structural & …, 2022 - nature.com
Enhancers play a central role in the spatiotemporal control of gene expression and tend to
work in a cell-type-specific manner. In addition, they are suggested to be major contributors …

Demystifying non-coding GWAS variants: an overview of computational tools and methods

M Schipper, D Posthuma - Human molecular genetics, 2022 - academic.oup.com
Genome-wide association studies (GWAS) have found the majority of disease-associated
variants to be non-coding. Major efforts into the charting of the non-coding regulatory …

Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data

MJ Zhang, K Hou, KK Dey, S Sakaue, KA Jagadeesh… - Nature …, 2022 - nature.com
Single-cell RNA sequencing (scRNA-seq) provides unique insights into the pathology and
cellular origin of disease. We introduce single-cell disease relevance score (scDRS), an …

[HTML][HTML] Prostaglandins and calprotectin are genetically and functionally linked to the Inflammatory Bowel Diseases

M Karaky, G Boucher, S Mola, S Foisy… - PLoS …, 2022 - journals.plos.org
Background Genome wide association studies (GWAS) have identified and validated more
than 200 genomic loci associated with the inflammatory bowel disease (IBD), although for …

[HTML][HTML] 3D genome organization links non-coding disease-associated variants to genes

G Orozco, S Schoenfelder, N Walker, S Eyre… - Frontiers in cell and …, 2022 - frontiersin.org
Genome sequencing has revealed over 300 million genetic variations in human
populations. Over 90% of variants are single nucleotide polymorphisms (SNPs), the …

[HTML][HTML] Genetic analysis of multiple sclerosis severity identifies a novel locus and implicates CNS resilience as a major determinant of outcome

S Baranzini, S Sawcer - 2022 - europepmc.org
Multiple sclerosis (MS) is an autoimmune disease of the central nervous system (CNS) that
results in significant neurodegeneration in the majority of those affected and is a common …

[HTML][HTML] Benchmarking post-GWAS analysis tools in major depression: Challenges and implications

J Pérez-Granado, J Piñero, LI Furlong - Frontiers in genetics, 2022 - frontiersin.org
Our knowledge of complex disorders has increased in the last years thanks to the
identification of genetic variants (GVs) significantly associated with disease phenotypes by …

Accounting for statistical non-additive interactions enables the recovery of missing heritability from GWAS summary statistics

SP Smith, G Darnell, D Udwin, A Harpak… - bioRxiv, 2022 - biorxiv.org
LD score regression (LDSC) is a method to estimate narrow-sense heritability from genome-
wide association study (GWAS) summary statistics alone, making it a fast and popular …

Genetic susceptibility to autoimmunity—Current status and challenges

M Huang, H Xu - Advances in Immunology, 2022 - Elsevier
Autoimmune diseases (ADs) often arise from a combination of genetic and environmental
triggers that disrupt the immune system's capability to properly tolerate body self-antigens …

A genome-wide association analysis of 2,622,830 individuals reveals new pathogenic pathways in gout

TJ Major, R Takei, H Matsuo, MP Leask, RK Topless… - medRxiv, 2022 - medrxiv.org
Gout is a chronic disease of monosodium urate crystal deposition in the setting of
hyperuricemia that typically presents with recurrent flares of acute inflammatory arthritis that …