CD8+ T cells in the cancer-immunity cycle

JR Giles, AM Globig, SM Kaech, EJ Wherry - Immunity, 2023 - cell.com
CD8+ T cells are end effectors of cancer immunity. Most forms of effective cancer
immunotherapy involve CD8+ T cell effector function. Here, we review the current …

Can we predict T cell specificity with digital biology and machine learning?

D Hudson, RA Fernandes, M Basham, G Ogg… - Nature Reviews …, 2023 - nature.com
Recent advances in machine learning and experimental biology have offered breakthrough
solutions to problems such as protein structure prediction that were long thought to be …

Challenges in neoantigen-directed therapeutics

L Lybaert, S Lefever, B Fant, E Smits, B De Geest… - Cancer Cell, 2023 - cell.com
A fundamental prerequisite for the efficacy of cancer immunotherapy is the presence of
functional, antigen-specific T cells within the tumor. Neoantigen-directed therapy is a …

[HTML][HTML] Machine learning methods and harmonized datasets improve immunogenic neoantigen prediction

M Müller, F Huber, M Arnaud, AI Kraemer, ER Altimiras… - Immunity, 2023 - cell.com
The accurate selection of neoantigens that bind to class I human leukocyte antigen (HLA)
and are recognized by autologous T cells is a crucial step in many cancer immunotherapy …

Deep neural networks predict class I major histocompatibility complex epitope presentation and transfer learn neoepitope immunogenicity

BA Albert, Y Yang, XM Shao, D Singh… - Nature machine …, 2023 - nature.com
Identifying neoepitopes that elicit an adaptive immune response is a major bottleneck to
developing personalized cancer vaccines. Experimental validation of candidate …

Cancer cell-intrinsic mechanisms driving acquired immune tolerance

E Ghorani, C Swanton, SA Quezada - Immunity, 2023 - cell.com
Immune evasion is a hallmark of cancer, enabling tumors to survive contact with the host
immune system and evade the cycle of immune recognition and destruction. Here, we …

Peptide-based vaccine for cancer therapies

L Buonaguro, M Tagliamonte - Frontiers in Immunology, 2023 - frontiersin.org
Different strategies based on peptides are available for cancer treatment, in particular to
counter-act the progression of tumor growth and disease relapse. In the last decade, in the …

Designing neoantigen cancer vaccines, trials, and outcomes

N Biswas, S Chakrabarti, V Padul, LD Jones… - Frontiers in …, 2023 - frontiersin.org
Neoantigen vaccines are based on epitopes of antigenic parts of mutant proteins expressed
in cancer cells. These highly immunogenic antigens may trigger the immune system to …

Genetic immune escape landscape in primary and metastatic cancer

F Martínez-Jiménez, P Priestley, C Shale, J Baber… - Nature Genetics, 2023 - nature.com
Studies have characterized the immune escape landscape across primary tumors. However,
whether late-stage metastatic tumors present differences in genetic immune escape (GIE) …

Neoantigen-targeted TCR-engineered T cell immunotherapy: current advances and challenges

Z Pang, M Lu, Y Zhang, Y Gao, J Bai, J Gu, L Xie… - Biomarker …, 2023 - Springer
Adoptive cell therapy using T cell receptor-engineered T cells (TCR-T) is a promising
approach for cancer therapy with an expectation of no significant side effects. In the human …