RNA splicing based on reporter genes system: Detection, imaging and applications

X Shi, M Won, C Tang, Q Ding, A Sharma… - Coordination Chemistry …, 2023 - Elsevier
The RNA splicing process which removes introns from nascent transcripts is an
indispensable step in gene expression. The life processes of organisms are composed of a …

Mutations causing X-linked amelogenesis imperfecta alter miRNA formation from amelogenin Exon4

R Shemirani, MH Le, Y Nakano - Journal of Dental …, 2023 - journals.sagepub.com
Amelogenin plays a crucial role in tooth enamel formation, and mutations on X-
chromosomal amelogenin cause X-linked amelogenesis imperfecta (AI). Amelogenin pre …

Spatiotemporal Monitoring of Subcellular mRNAs In Situ via Polyadenine-Mediated Dual-Color Sticky Flares

D Zhu, X Li, Y Zhu, Q Wei, Y Hu, S Su… - … Applied Materials & …, 2023 - ACS Publications
Spatiotemporal monitoring of multiple low-abundance messenger RNAs (mRNAs) is vitally
important for the diagnosis and pathologic analysis of cancer. However, it remains a clinical …

[HTML][HTML] Alternative splicing of PSMD13 mediated by genetic variants is significantly associated with endometrial cancer risk

S He, R Cao, Y Mao, N Li, Y Wang, H Ma… - Journal of Gynecologic …, 2023 - ncbi.nlm.nih.gov
Objective Accumulating evidence has shown that aberrant alternative splicing events are
closely associated with the onset and development of cancer. However, whether genetic …

Hybrid-seq deciphers the complex transcriptional profile of the human BRCA1 DNA repair associated gene

PG Adamopoulos, K Athanasopoulou, MA Boti… - RNA biology, 2023 - Taylor & Francis
ABSTRACT Breast Cancer Gene 1 (BRCA1) is a tumour suppressor protein that modulates
multiple biological processes including genomic stability and DNA damage repair. Although …

Pan-Cancer Profiling of Intron Retention and Its Clinical Significance in Diagnosis and Prognosis

L Huang, X Zeng, H Ma, Y Yang, Y Akimoto, G Wei… - Cancers, 2023 - mdpi.com
Simple Summary Alternative splicing generates transcripts that can promote tumorigenesis,
but intron retention (IR), a form of alternative splicing, remains understudied. We …

Specific recognition and sensitive quantification of mRNA splice variants via one-pot ligation-dependent loop-mediated isothermal amplification

M Zhang, H Wang, J Han, H Wang, Y Jia, W Hong… - Analyst, 2023 - pubs.rsc.org
Specific recognition and sensitive quantification of mRNA alternative splice variants have
been a necessity for exploring the regulatory mechanism of RNA splicing and revealing the …

Specific multiplexed detection of mRNA splice variants based on size-coding DNA probes and universal PCR amplification

Y Jia, H Wang, H Wang, F Wang, K Gao, Z Li - Analyst, 2023 - pubs.rsc.org
Alternative messenger RNA (mRNA) splicing is a vital regulatory process during the gene
expression of higher eukaryotes. The specific and sensitive quantification of disease-related …

[HTML][HTML] Splam: a deep-learning-based splice site predictor that improves spliced alignments

KH Chao, A Mao, SL Salzberg, M Pertea - bioRxiv, 2023 - ncbi.nlm.nih.gov
The process of splicing messenger RNA to remove introns plays a central role in creating
genes and gene variants. Here we describe Splam, a novel method for predicting splice …

In silico assessment of DNA damage response gene variants associated with head and neck cancer

R Das, S Kundu, S Laskar, Y Choudhury… - Journal of …, 2023 - Taylor & Francis
Head and neck cancer (HNC), the sixth most common cancer globally, stands first in India,
especially Northeast India, where tobacco usage is predominant, which introduces various …