SBSM-pro: support bio-sequence machine for proteins

Y Wang, Y Zhai, Y Ding, Q Zou - arXiv preprint arXiv:2308.10275, 2023 - arxiv.org
Proteins play a pivotal role in biological systems. The use of machine learning algorithms for
protein classification can assist and even guide biological experiments, offering crucial …

[HTML][HTML] Small molecule-mediated targeting of microRNAs for drug discovery: experiments, computational techniques, and disease implications

J Sun, M Xu, J Ru, A James-Bott, D Xiong… - European Journal of …, 2023 - Elsevier
Small molecules have been providing medical breakthroughs for human diseases for more
than a century. Recently, identifying small molecule inhibitors that target microRNAs …

Cellenboost: a boosting-based ligand-receptor interaction identification model for cell-to-cell communication inference

L Peng, R Yuan, C Han, G Han, J Tan… - IEEE Transactions …, 2023 - ieeexplore.ieee.org
Cell-to-cell communication (CCC) plays important roles in multicellular organisms. The
identification of communication between cancer cells themselves and one between cancer …

RPI-CapsuleGAN: Predicting RNA-protein interactions through an interpretable generative adversarial capsule network

Y Wang, X Wang, C Chen, H Gao, A Salhi, X Gao… - Pattern Recognition, 2023 - Elsevier
ABSTRACT RNA-protein interactions (RPI) play a crucial regulatory role in cellular
physiological processes. The study and prediction of RPIs can be insightful for exploring …

An ensemble of stacking classifiers for improved prediction of miRNA–mRNA interactions

P Dhakal, H Tayara, KT Chong - Computers in Biology and Medicine, 2023 - Elsevier
MicroRNAs (miRNAs) are small non-coding RNA molecules that play a crucial role in
regulating gene expression at the post-transcriptional level by binding to potential target …

Analysis approaches for the identification and prediction of N6-methyladenosine sites

Y Yang, Z Liu, J Lu, Y Sun, Y Fu, M Pan, X Xie, Q Ge - Epigenetics, 2023 - Taylor & Francis
The global dynamics in a variety of biological processes can be revealed by mapping
transcriptional m6A sites, in particular full-transcriptome m6A. And individual m6A sites have …

DNA-MP: a generalized DNA modifications predictor for multiple species based on powerful sequence encoding method

M Nabeel Asim, M Ali Ibrahim, A Fazeel… - Briefings in …, 2023 - academic.oup.com
Accurate prediction of deoxyribonucleic acid (DNA) modifications is essential to explore and
discern the process of cell differentiation, gene expression and epigenetic regulation …

The technological emergence of automl: A survey of performant software and applications in the context of industry

A Scriven, DJ Kedziora, K Musial… - … and Trends® in …, 2023 - nowpublishers.com
With most technical fields, there exists a delay between fundamental academic research and
practical industrial uptake. Whilst some sciences have robust and well-established …

[HTML][HTML] New boosting approaches for improving cluster-based undersampling in problems with imbalanced data

IA Khandokar, S Shatabda - Decision Analytics Journal, 2023 - Elsevier
Class unbalanced datasets are frequently encountered in a variety of areas including health,
security, and finance. Often these datasets create bias in the supervised learning models …

DeepImmuno-PSSM: Identification of Immunoglobulin based on Deep learning and PSSM-Profiles

A Ghulam, ZNK Swati, F Ali, S Tunio, N Jabeen… - … on Computer Sciences, 2023 - vfast.org
Immunoglobulin has a close connection to a number of disorders and is important in both
biological and medicinal contexts. Therefore, it is crucial for illness research to employ …