Fourteen years of cellular deconvolution: methodology, applications, technical evaluation and outstanding challenges

H Nguyen, H Nguyen, D Tran, S Draghici… - Nucleic Acids …, 2024 - academic.oup.com
Single-cell RNA sequencing (scRNA-Seq) is a recent technology that allows for the
measurement of the expression of all genes in each individual cell contained in a sample …

Association of phthalate exposure with reproductive outcomes among infertile couples undergoing in vitro fertilization: A systematic review

T Xiangming, Q Boyi, Y Li, L Huanhuan, W Zhou - Environmental Research, 2024 - Elsevier
Human fertility is impacted by changes in lifestyle and environmental deterioration. To
increase human fertility, assisted reproductive technology (ART) has been extensively used …

Low-input lipidomics reveals lipid metabolism remodelling during early mammalian embryo development

L Zhang, J Zhao, SM Lam, L Chen, Y Gao, W Wang… - Nature Cell …, 2024 - nature.com
Lipids are indispensable for energy storage, membrane structure and cell signalling.
However, dynamic changes in various categories of endogenous lipids in mammalian early …

Interaction network of human early embryonic transcription factors

L Gawriyski, Z Tan, X Liu, I Chowdhury… - EMBO …, 2024 - embopress.org
Embryonic genome activation (EGA) occurs during preimplantation development and is
characterized by the initiation of de novo transcription from the embryonic genome. Despite …

[PDF][PDF] A temporal extracellular transcriptome atlas of human pre-implantation development

Q Wu, Z Zhou, Z Yan, M Connel, G Garzo, A Yeo… - Cell Genomics, 2024 - cell.com
Non-invasively evaluating gene expression products in human pre-implantation embryos
remains a significant challenge. Here, we develop a non-invasive method for …

[PDF][PDF] An extended wave of global mRNA deadenylation sets up a switch in translation regulation across the mammalian oocyte-to-embryo transition

K Lee, K Cho, R Morey, H Cook-Andersen - Cell Reports, 2024 - cell.com
Without new transcription, gene expression across the oocyte-to-embryo transition (OET)
relies instead on regulation of mRNA poly (A) tails to control translation. However, how tail …

[HTML][HTML] A single-cell time-lapse of mouse prenatal development from gastrula to birth

C Qiu, BK Martin, IC Welsh, RM Daza, TM Le, X Huang… - Nature, 2024 - nature.com
The house mouse (Mus musculus) is an exceptional model system, combining genetic
tractability with close evolutionary affinity to humans,. Mouse gestation lasts only 3 weeks …

Self-renewing human naïve pluripotent stem cells dedifferentiate in 3D culture and form blastoids spontaneously

M Guo, J Wu, C Chen, X Wang, A Gong, W Guan… - Nature …, 2024 - nature.com
Human naïve pluripotent stem cells (hnPSCs) can generate integrated models of blastocysts
termed blastoids upon switch to inductive medium. However, the underlying mechanisms …

The effect of data transformation on low-dimensional integration of single-cell RNA-seq

Y Park, AC Hauschild - BMC bioinformatics, 2024 - Springer
Background Recent developments in single-cell RNA sequencing have opened up a
multitude of possibilities to study tissues at the level of cellular populations. However, the …

KLF4 facilitates chromatin accessibility remodeling in porcine early embryos

W Zhu, G Bu, R Hu, J Zhang, L Qiao, K Zhou… - Science China Life …, 2024 - Springer
Chromatin accessibility remodeling driven by pioneer factors is critical for the development
of early embryos. Current studies have illustrated several pioneer factors as being important …