Fcγ receptors and immunomodulatory antibodies in cancer

F Galvez-Cancino, AP Simpson, C Costoya… - Nature Reviews …, 2024 - nature.com
The discovery of both cytotoxic T lymphocyte-associated antigen 4 (CTLA4) and
programmed cell death protein 1 (PD1) as negative regulators of antitumour immunity led to …

Spatial pharmacology using mass spectrometry imaging

P Rajbhandari, TV Neelakantan, N Hosny… - Trends in …, 2024 - cell.com
The emerging and powerful field of spatial pharmacology can map the spatial distribution of
drugs and their metabolites, as well as their effects on endogenous biomolecules including …

De novo detection of somatic mutations in high-throughput single-cell profiling data sets

F Muyas, CM Sauer, JE Valle-Inclán, R Li… - Nature …, 2024 - nature.com
Abstract Characterization of somatic mutations at single-cell resolution is essential to study
cancer evolution, clonal mosaicism and cell plasticity. Here, we describe SComatic, an …

deMULTIplex2: robust sample demultiplexing for scRNA-seq

Q Zhu, DN Conrad, ZJ Gartner - Genome Biology, 2024 - Springer
Sample multiplexing enables pooled analysis during single-cell RNA sequencing workflows,
thereby increasing throughput and reducing batch effects. A challenge for all multiplexing …

Quantifying cell-state densities in single-cell phenotypic landscapes using Mellon

DJ Otto, C Jordan, B Dury, C Dien, M Setty - Nature Methods, 2024 - nature.com
Cell-state density characterizes the distribution of cells along phenotypic landscapes and is
crucial for unraveling the mechanisms that drive diverse biological processes. Here, we …

Nanoscale Methods for Longitudinal Extraction of Intracellular Contents

YJ Quek, A Tay - Advanced Materials, 2024 - Wiley Online Library
Longitudinal analysis of intracellular contents including gene and protein expression is
crucial for deciphering the fundamentally dynamic nature of cells. This offers invaluable …

Spatial transcriptomics in health and disease

S Jain, MT Eadon - Nature Reviews Nephrology, 2024 - nature.com
The ability to localize hundreds of macromolecules to discrete locations, structures and cell
types in a tissue is a powerful approach to understand the cellular and spatial organization …

NCI cancer research data commons: lessons learned and future state

E Kim, T Davidsen, BN Davis-Dusenbery, A Baumann… - Cancer Research, 2024 - AACR
More than ever, scientific progress in cancer research hinges on our ability to combine
datasets and extract meaningful interpretations to better understand diseases and ultimately …

Multiplex protein imaging in tumour biology

N de Souza, S Zhao, B Bodenmiller - Nature Reviews Cancer, 2024 - nature.com
Tissue imaging has become much more colourful in the past decade. Advances in both
experimental and analytical methods now make it possible to image protein markers in …

[HTML][HTML] In situ characterization of the tumor microenvironment

H Sadeghirad, VY Naei, K O'Byrne, ME Warkiani… - Current Opinion in …, 2024 - Elsevier
Highlights•Comprehensive TME characterization is required to understand therapy
resistance and sensitivity to current generations of therapeutics•Spatial profiling has …