[HTML][HTML] The role of gut microbiota in T cell immunity and immune mediated disorders

JA Shim, JH Ryu, Y Jo, C Hong - International journal of biological …, 2023 - ncbi.nlm.nih.gov
Gut microbiota was only considered as a commensal organism that aids in digestion, but
recent studies revealed that the microbiome play a critical role in both physiological and …

Chromosome 21 and down syndrome: from genomics to pathophysiology

SE Antonarakis, R Lyle, ET Dermitzakis… - Nature reviews …, 2004 - nature.com
The sequence of chromosome 21 was a turning point for the understanding of Down
syndrome. Comparative genomics is beginning to identify the functional components of the …

[HTML][HTML] Towards complete and error-free genome assemblies of all vertebrate species

A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti… - Nature, 2021 - nature.com
High-quality and complete reference genome assemblies are fundamental for the
application of genomics to biology, disease, and biodiversity conservation. However, such …

BlobToolKit–interactive quality assessment of genome assemblies

R Challis, E Richards, J Rajan… - G3: Genes …, 2020 - academic.oup.com
Reconstruction of target genomes from sequence data produced by instruments that are
agnostic as to the species-of-origin may be confounded by contaminant DNA. Whether …

[HTML][HTML] Mouse genomic variation and its effect on phenotypes and gene regulation

TM Keane, L Goodstadt, P Danecek, MA White… - Nature, 2011 - nature.com
We report genome sequences of 17 inbred strains of laboratory mice and identify almost ten
times more variants than previously known. We use these genomes to explore the …

Initial sequencing and comparative analysis of the mouse genome

European Bioinformatics Institute: Birney Ewan 3 … - Nature, 2002 - nature.com
The sequence of the mouse genome is a key informational tool for understanding the
contents of the human genome and a key experimental tool for biomedical research. Here …

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

TD Wu, CK Watanabe - Bioinformatics, 2005 - academic.oup.com
Motivation: We introduce gmap, a standalone program for mapping and aligning cDNA
sequences to a genome. The program maps and aligns a single sequence with minimal …

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

University of Utah Weiss Robert B. 14 Dunn Diane M … - Nature, 2004 - nature.com
The laboratory rat (Rattus norvegicus) is an indispensable tool in experimental medicine
and drug development, having made inestimable contributions to human health. We report …

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

RIKEN Genome Exploration Research Group Phase I … - Nature, 2002 - nature.com
Only a small proportion of the mouse genome is transcribed into mature messenger RNA
transcripts. There is an international collaborative effort to identify all full-length mRNA …

[HTML][HTML] The diploid genome sequence of an individual human

S Levy, G Sutton, PC Ng, L Feuk, AL Halpern… - PLoS …, 2007 - journals.plos.org
Presented here is a genome sequence of an individual human. It was produced from∼ 32
million random DNA fragments, sequenced by Sanger dideoxy technology and assembled …