[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …

[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems

J Pawlowski, M Kelly-Quinn, F Altermatt… - Science of the Total …, 2018 - Elsevier
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …

[图书][B] Planktic foraminifers in the modern ocean

R Schiebel, C Hemleben - 2017 - Springer
The purpose of this book is to provide timely and comprehensive information on extant
planktic foraminifers. This book is based on 'Modern Planktonic Foraminifera'published by …

Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap

T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …

Predicting the ecological quality status of marine environments from eDNA metabarcoding data using supervised machine learning

T Cordier, P Esling, F Lejzerowicz, J Visco… - … science & technology, 2017 - ACS Publications
Monitoring biodiversity is essential to assess the impacts of increasing anthropogenic
activities in marine environments. Traditionally, marine biomonitoring involves the sorting …

Deep-sea, deep-sequencing: metabarcoding extracellular DNA from sediments of marine canyons

M Guardiola, MJ Uriz, P Taberlet, E Coissac… - PloS one, 2015 - journals.plos.org
Marine sediments are home to one of the richest species pools on Earth, but logistics and a
dearth of taxonomic work-force hinders the knowledge of their biodiversity. We characterized …

Environmental monitoring: inferring the diatom index from next-generation sequencing data

JA Visco, L Apothéloz-Perret-Gentil… - … science & technology, 2015 - ACS Publications
Diatoms are widely used as bioindicators for the assessment of water quality in rivers and
streams. Classically, the diatom biotic indices are based on the relative abundance of …

Biological effects on the migration and transformation of microplastics in the marine environment

S Fan, Z Yan, L Qiao, F Gui, T Li, Q Yang… - Marine Environmental …, 2023 - Elsevier
Microplastics (MPs) are ubiquitous, difficult to degrade, and potentially threatening to
organisms in marine environment, so it is important to clarify the factors that affect their …

Protist metabarcoding and environmental biomonitoring: time for change

J Pawlowski, F Lejzerowicz… - European Journal of …, 2016 - Elsevier
High-throughput amplicon sequencing of environmental DNA and/or RNA proved to be a
powerful tool to describe protist diversity. This new approach called also the metabarcoding …

DNA sequencing as a tool to monitor marine ecological status

KD Goodwin, LR Thompson, B Duarte… - Frontiers in Marine …, 2017 - frontiersin.org
Many ocean policies mandate integrated, ecosystem-based approaches to marine
monitoring, driving a global need for efficient, low-cost bioindicators of marine ecological …