A comprehensive survey of clustering algorithms: State-of-the-art machine learning applications, taxonomy, challenges, and future research prospects

AE Ezugwu, AM Ikotun, OO Oyelade… - … Applications of Artificial …, 2022 - Elsevier
Clustering is an essential tool in data mining research and applications. It is the subject of
active research in many fields of study, such as computer science, data science, statistics …

Computational flow cytometry: helping to make sense of high-dimensional immunology data

Y Saeys, S Van Gassen, BN Lambrecht - Nature Reviews Immunology, 2016 - nature.com
Recent advances in flow cytometry allow scientists to measure an increasing number of
parameters per cell, generating huge and high-dimensional datasets. To analyse, visualize …

[图书][B] Model-based clustering and classification for data science: with applications in R

C Bouveyron, G Celeux, TB Murphy, AE Raftery - 2019 - books.google.com
Cluster analysis finds groups in data automatically. Most methods have been heuristic and
leave open such central questions as: how many clusters are there? Which method should I …

FlowSOM: Using self‐organizing maps for visualization and interpretation of cytometry data

S Van Gassen, B Callebaut, MJ Van Helden… - Cytometry Part …, 2015 - Wiley Online Library
The number of markers measured in both flow and mass cytometry keeps increasing
steadily. Although this provides a wealth of information, it becomes infeasible to analyze …

[HTML][HTML] Flow cytometry: the next revolution

JP Robinson, R Ostafe, SN Iyengar, B Rajwa, R Fischer - Cells, 2023 - mdpi.com
Unmasking the subtleties of the immune system requires both a comprehensive knowledge
base and the ability to interrogate that system with intimate sensitivity. That task, to a …

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

P Qiu, EF Simonds, SC Bendall, KD Gibbs Jr… - Nature …, 2011 - nature.com
The ability to analyze multiple single-cell parameters is critical for understanding cellular
heterogeneity. Despite recent advances in measurement technology, methods for analyzing …

Automated identification of stratifying signatures in cellular subpopulations

RV Bruggner, B Bodenmiller, DL Dill… - Proceedings of the …, 2014 - National Acad Sciences
Elucidation and examination of cellular subpopulations that display condition-specific
behavior can play a critical contributory role in understanding disease mechanism, as well …

[HTML][HTML] Critical assessment of automated flow cytometry data analysis techniques

N Aghaeepour, G Finak, FlowCAP Consortium… - Nature …, 2013 - nature.com
Traditional methods for flow cytometry (FCM) data processing rely on subjective manual
gating. Recently, several groups have developed computational methods for identifying cell …

COMPASS identifies T-cell subsets correlated with clinical outcomes

L Lin, G Finak, K Ushey, C Seshadri, TR Hawn… - Nature …, 2015 - nature.com
Advances in flow cytometry and other single-cell technologies have enabled high-
dimensional, high-throughput measurements of individual cells as well as the interrogation …

[HTML][HTML] flowCore: a Bioconductor package for high throughput flow cytometry

F Hahne, N LeMeur, RR Brinkman, B Ellis… - BMC …, 2009 - Springer
Background Recent advances in automation technologies have enabled the use of flow
cytometry for high throughput screening, generating large complex data sets often in clinical …