Machine learning phenomics (MLP) combining deep learning with time-lapse-microscopy for monitoring colorectal adenocarcinoma cells gene expression and drug …

M D'Orazio, M Murdocca, A Mencattini, P Casti… - Scientific Reports, 2022 - nature.com
High-throughput phenotyping is becoming increasingly available thanks to analytical and
bioinformatics approaches that enable the use of very high-dimensional data and to the …

Combining microfluidics with machine learning algorithms for RBC classification in rare hereditary hemolytic anemia

V Rizzuto, A Mencattini, B Álvarez-González… - Scientific reports, 2021 - nature.com
Combining microfluidics technology with machine learning represents an innovative
approach to conduct massive quantitative cell behavior study and implement smart decision …

Discovering the hidden messages within cell trajectories using a deep learning approach for in vitro evaluation of cancer drug treatments

A Mencattini, D Di Giuseppe, MC Comes, P Casti… - Scientific reports, 2020 - nature.com
We describe a novel method to achieve a universal, massive, and fully automated analysis
of cell motility behaviours, starting from time-lapse microscopy images. The approach was …

Deep-Manager: A versatile tool for optimal feature selection in live-cell imaging analysis

A Mencattini, M D'Orazio, P Casti, MC Comes… - Communications …, 2023 - nature.com
One of the major problems in bioimaging, often highly underestimated, is whether features
extracted for a discrimination or regression task will remain valid for a broader set of similar …

Recursive deep prior video: a super resolution algorithm for time-lapse microscopy of organ-on-chip experiments

P Cascarano, MC Comes, A Mencattini, MC Parrini… - Medical Image …, 2021 - Elsevier
Biological experiments based on organ-on-chips (OOCs) exploit light Time-Lapse
Microscopy (TLM) for a direct observation of cell movement that is an observable signature …

From petri dishes to organ on chip platform: The increasing importance of machine learning and image analysis

A Mencattini, F Mattei, G Schiavoni… - Frontiers in …, 2019 - frontiersin.org
The increasing interest for microfluidic devices in medicine and biology has opened the way
to new time-lapse microscopy era where the amount of images and their acquisition time will …

Deciphering cancer cell behavior from motility and shape features: Peer prediction and dynamic selection to support cancer diagnosis and therapy

M D'Orazio, F Corsi, A Mencattini, D Di Giuseppe… - Frontiers in …, 2020 - frontiersin.org
Cell motility varies according to intrinsic features and microenvironmental stimuli, being a
signature of underlying biological phenomena. The heterogeneity in cell response, due to …

S3-VAE: A novel Supervised-Source-Separation Variational AutoEncoder algorithm to discriminate tumor cell lines in time-lapse microscopy images

P Casti, S Cardarelli, MC Comes, M D'Orazio… - Expert Systems with …, 2023 - Elsevier
The derivation of input–output relationships in deep learning architectures is mostly a black-
box process, in which uninformative or confounding factors might bias the classification …

Apoptosis mapping in space and time of 3D tumor ecosystems reveals transmissibility of cytotoxic cancer death

I Veith, A Mencattini, V Picant, M Serra… - PLoS computational …, 2021 - journals.plos.org
The emerging tumor-on-chip (ToC) approaches allow to address biomedical questions out
of reach with classical cell culture techniques: in biomimetic 3D hydrogels they partially …

Machine learning microfluidic based platform: Integration of Lab-on-Chip devices and data analysis algorithms for red blood cell plasticity evaluation in Pyruvate …

A Mencattini, V Rizzuto, G Antonelli… - Sensors and Actuators A …, 2023 - Elsevier
Microfluidics represents a very promising technological solution for conducting massive
biological experiments. However, the difficulty of managing the amount of information …