Into the eye of the cytokine storm

JR Tisoncik, MJ Korth, CP Simmons… - Microbiology and …, 2012 - Am Soc Microbiol
The cytokine storm has captured the attention of the public and the scientific community
alike, and while the general notion of an excessive or uncontrolled release of …

Leveraging big data analytics in healthcare enhancement: trends, challenges and opportunities

A Rehman, S Naz, I Razzak - Multimedia Systems, 2022 - Springer
Clinical decisions are more promising and evidence-based, hence, big data analytics to
assist clinical decision-making has been expressed for a variety of clinical fields. Due to the …

VEGF-A/VEGFR2 signaling network in endothelial cells relevant to angiogenesis

CS Abhinand, R Raju, SJ Soumya, PS Arya… - Journal of cell …, 2016 - Springer
Vascular endothelial growth factor-A (VEGF-A) is essential for endothelial cell functions
associated with angiogenesis. Signal transduction networks initiated by VEGFA/VEGFR2 …

PathVisio 3: an extendable pathway analysis toolbox

M Kutmon, MP van Iersel, A Bohler… - PLoS computational …, 2015 - journals.plos.org
PathVisio is a commonly used pathway editor, visualization and analysis software.
Biological pathways have been used by biologists for many years to describe the detailed …

[HTML][HTML] RCy3: Network biology using Cytoscape from within R

JA Gustavsen, S Pai, R Isserlin, B Demchak… - …, 2019 - ncbi.nlm.nih.gov
RCy3 is an R package in Bioconductor that communicates with Cytoscape via its REST API,
providing access to the full feature set of Cytoscape from within the R programming …

Sphingolipid and glycosphingolipid metabolic pathways in the era of sphingolipidomics

AH Merrill Jr - Chemical reviews, 2011 - ACS Publications
Much has been made about JLW Thudichum's colorful, and one could say clairvoyant,
naming of sphingosine “in commemoration of the many enigmas which it presented to the …

WikiPathways: building research communities on biological pathways

T Kelder, MP Van Iersel, K Hanspers… - Nucleic acids …, 2012 - academic.oup.com
Here, we describe the development of WikiPathways (http://www. wikipathways. org), a
public wiki for pathway curation, since it was first published in 2008. New features are …

Transcriptomic and metabolomic data integration

R Cavill, D Jennen, J Kleinjans… - Briefings in …, 2016 - academic.oup.com
Many studies now produce parallel data sets from different omics technologies; however, the
task of interpreting the acquired data in an integrated fashion is not trivial. This review covers …

Integrated omics analysis of specialized metabolism in medicinal plants

A Rai, K Saito, M Yamazaki - The Plant Journal, 2017 - Wiley Online Library
Medicinal plants are a rich source of highly diverse specialized metabolites with important
pharmacological properties. Until recently, plant biologists were limited in their ability to …

Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology

PD Karp, M Latendresse, SM Paley… - Briefings in …, 2016 - academic.oup.com
Pathway Tools is a bioinformatics software environment with a broad set of capabilities. The
software provides genome-informatics tools such as a genome browser, sequence …