Next generation sequencing and bioinformatics analysis of family genetic inheritance

AM Kanzi, JE San, B Chimukangara, E Wilkinson… - Frontiers in …, 2020 - frontiersin.org
Mendelian and complex genetic trait diseases continue to burden and affect society both
socially and economically. The lack of effective tests has hampered diagnosis thus, the …

Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping …

O Wang, R Chin, X Cheng, MKY Wu, Q Mao… - Genome …, 2019 - genome.cshlp.org
Here, we describe single-tube long fragment read (stLFR), a technology that enables
sequencing of data from long DNA molecules using economical second-generation …

Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing

C Fang, H Zhong, Y Lin, B Chen, M Han, H Ren… - …, 2018 - academic.oup.com
Background More extensive use of metagenomic shotgun sequencing in microbiome
research relies on the development of high-throughput, cost-effective sequencing. Here we …

Exosome‐mediated pyroptosis of miR‐93‐TXNIP‐NLRP3 leads to functional difference between M1 and M2 macrophages in sepsis‐induced acute kidney injury

CX Juan, Y Mao, Q Cao, Y Chen… - Journal of cellular …, 2021 - Wiley Online Library
Sepsis is a systemic inflammatory response syndrome caused by infection, resulting in
organ dysfunction. Sepsis‐induced acute kidney injury (AKI) is one of the most common …

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

SST Mak, S Gopalakrishnan, C Carøe, C Geng… - …, 2017 - academic.oup.com
Ancient DNA research has been revolutionized following development of next-generation
sequencing platforms. Although a number of such platforms have been applied to ancient …

Common diseases alter the physiological age-related blood microRNA profile

T Fehlmann, B Lehallier, N Schaum, O Hahn… - Nature …, 2020 - nature.com
Aging is a key risk factor for chronic diseases of the elderly. MicroRNAs regulate post-
transcriptional gene silencing through base-pair binding on their target mRNAs. We …

Systematic comparison of germline variant calling pipelines cross multiple next-generation sequencers

J Chen, X Li, H Zhong, Y Meng, H Du - Scientific reports, 2019 - nature.com
The development and innovation of next generation sequencing (NGS) and the subsequent
analysis tools have gain popularity in scientific researches and clinical diagnostic …

MicroRNA in diagnosis and therapy monitoring of early-stage triple-negative breast cancer

M Kahraman, A Röske, T Laufer, T Fehlmann… - Scientific reports, 2018 - nature.com
Breast cancer is a heterogeneous disease with distinct molecular subtypes including the
aggressive subtype triple-negative breast cancer (TNBC). We compared blood-borne …

Phytochrome A negatively regulates the shade avoidance response by increasing auxin/indole acidic acid protein stability

C Yang, F Xie, Y Jiang, Z Li, X Huang, L Li - Developmental cell, 2018 - cell.com
The reduction in the red to far-red light ratio (R/FR) and photosynthetically active radiation
caused by dense planting initiates shade avoidance responses (SARs) to help plants …

Comparative analysis of sequencing technologies for single-cell transcriptomics

KN Natarajan, Z Miao, M Jiang, X Huang, H Zhou, J Xie… - Genome Biology, 2019 - Springer
Single-cell RNA-seq technologies require library preparation prior to sequencing. Here, we
present the first report to compare the cheaper BGISEQ-500 platform to the Illumina HiSeq …