Genotyping‐by‐sequencing approaches to characterize crop genomes: choosing the right tool for the right application

A Scheben, J Batley, D Edwards - Plant biotechnology journal, 2017 - Wiley Online Library
In the last decade, the revolution in sequencing technologies has deeply impacted crop
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …

SNP markers and their impact on plant breeding

J Mammadov, R Aggarwal… - … journal of plant …, 2012 - Wiley Online Library
The use of molecular markers has revolutionized the pace and precision of plant genetic
analysis which in turn facilitated the implementation of molecular breeding of crops. The last …

Multiple wheat genomes reveal global variation in modern breeding

S Walkowiak, L Gao, C Monat, G Haberer, MT Kassa… - Nature, 2020 - nature.com
Advances in genomics have expedited the improvement of several agriculturally important
crops but similar efforts in wheat (Triticum spp.) have been more challenging. This is largely …

Characterization of a Wheat Breeders' Array suitable for high‐throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivum)

AM Allen, MO Winfield, AJ Burridge… - Plant biotechnology …, 2017 - Wiley Online Library
Targeted selection and inbreeding have resulted in a lack of genetic diversity in elite
hexaploid bread wheat accessions. Reduced diversity can be a limiting factor in the …

High‐density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool

MO Winfield, AM Allen, AJ Burridge… - Plant biotechnology …, 2016 - Wiley Online Library
In wheat, a lack of genetic diversity between breeding lines has been recognized as a
significant block to future yield increases. Species belonging to bread wheat's secondary …

Food security: the challenge of increasing wheat yield and the importance of not compromising food safety

T Curtis, NG Halford - Annals of applied biology, 2014 - Wiley Online Library
Current wheat yield and consumption is considered in the context of the historical
development of wheat, from early domestication through to modern plant breeding, the …

Structural and functional partitioning of bread wheat chromosome 3B

F Choulet, A Alberti, S Theil, N Glover, V Barbe… - Science, 2014 - science.org
We produced a reference sequence of the 1-gigabase chromosome 3B of hexaploid bread
wheat. By sequencing 8452 bacterial artificial chromosomes in pools, we assembled a …

Targeted capture in evolutionary and ecological genomics

MR Jones, JM Good - Molecular ecology, 2016 - Wiley Online Library
The rapid expansion of next‐generation sequencing has yielded a powerful array of tools to
address fundamental biological questions at a scale that was inconceivable just a few years …

Exome sequencing: current and future perspectives

A Warr, C Robert, D Hume, A Archibald… - G3: Genes …, 2015 - academic.oup.com
The completion of a reference genome sequence for humans took more than 200 scientists
more than a decade in a project that cost almost $3 billion to complete (International Human …

Recent progress and challenges in population genetics of polyploid organisms: an overview of current state‐of‐the‐art molecular and statistical tools

F Dufresne, M Stift, R Vergilino, BK Mable - Molecular ecology, 2014 - Wiley Online Library
Despite the importance of polyploidy and the increasing availability of new genomic data,
there remain important gaps in our knowledge of polyploid population genetics. These gaps …