Evolution and diversity of transposable elements in vertebrate genomes

CG Sotero-Caio, RN Platt, A Suh… - Genome biology and …, 2017 - academic.oup.com
Transposable elements (TEs) are selfish genetic elements that mobilize in genomes via
transposition or retrotransposition and often make up large fractions of vertebrate genomes …

Transposons, genome size, and evolutionary insights in animals

A Canapa, M Barucca, MA Biscotti, M Forconi… - … and genome research, 2016 - karger.com
The relationship between genome size and the percentage of transposons in 161 animal
species evidenced that variations in genome size are linked to the amplification or the …

Comparative genomic investigation of high-elevation adaptation in ectothermic snakes

JT Li, YD Gao, L Xie, C Deng, P Shi… - Proceedings of the …, 2018 - National Acad Sciences
Several previous genomic studies have focused on adaptation to high elevations, but these
investigations have been largely limited to endotherms. Snakes of the genus Thermophis …

The squamate tree of life

TR Simões, RA Pyron - Bulletin of the Museum of Comparative Zoology, 2021 - BioOne
Squamates (lizards, snakes, and their kin such as amphisbaenians, or “worm lizards”)
represent the world's most diverse clade of terrestrial vertebrates with∼ 11,000 described …

Understanding the evolution of reptile chromosomes through applications of combined cytogenetics and genomics approaches

JE Deakin, T Ezaz - Cytogenetic and Genome Research, 2019 - karger.com
Studies of reptile (nonavian reptiles) chromosomes began well over a century ago (1897)
with the initial report on the description of sand lizard (Lacerta agilis) chromosomes. Since …

[HTML][HTML] Convergent and lineage-specific genomic differences in limb regulatory elements in limbless reptile lineages

JG Roscito, K Sameith, BM Kirilenko, N Hecker… - Cell reports, 2022 - cell.com
Loss of limbs evolved many times in squamate reptiles. Here we investigated the genomic
basis of convergent limb loss in reptiles. We sequenced the genomes of a closely related …

[HTML][HTML] Historical contingency in a multigene family facilitates adaptive evolution of toxin resistance

JW McGlothlin, ME Kobiela, CR Feldman, TA Castoe… - Current Biology, 2016 - cell.com
Novel adaptations must originate and function within an already established genome [1]. As
a result, the ability of a species to adapt to new environmental challenges is predicted to be …

[HTML][HTML] Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate …

JE Deakin, MJ Edwards, H Patel, D O'Meally, J Lian… - BMC genomics, 2016 - Springer
Background Squamates (lizards and snakes) are a speciose lineage of reptiles displaying
considerable karyotypic diversity, particularly among lizards. Understanding the evolution of …

Optimizing phylogenomics with rapidly evolving long exons: comparison with anchored hybrid enrichment and ultraconserved elements

BR Karin, T Gamble, TR Jackman - Molecular Biology and …, 2020 - academic.oup.com
Marker selection has emerged as an important component of phylogenomic study design
due to rising concerns of the effects of gene tree estimation error, model misspecification …

Comparative genomics reveals accelerated evolution in conserved pathways during the diversification of anole lizards

M Tollis, ED Hutchins, J Stapley… - Genome Biology and …, 2018 - academic.oup.com
Squamates include all lizards and snakes, and display some of the most diverse and
extreme morphological adaptations among vertebrates. However, compared with birds and …