Versatile Deep Learning Pipeline for Transferable Chemical Data Extraction

AS Alshehri, KA Horstmann, F You - Journal of Chemical …, 2024 - ACS Publications
Chemical information disseminated in scientific documents offers an untapped potential for
deep learning-assisted insights and breakthroughs. Automated extraction efforts have …

Diffusion-based generative AI for exploring transition states from 2D molecular graphs

S Kim, J Woo, WY Kim - Nature Communications, 2024 - nature.com
The exploration of transition state (TS) geometries is crucial for elucidating chemical reaction
mechanisms and modeling their kinetics. Recently, machine learning (ML) models have …

Artificial-Intelligence-Generated Content with Diffusion Models: A Literature Review

X Wang, Z He, X Peng - Mathematics, 2024 - mdpi.com
Diffusion models have swiftly taken the lead in generative modeling, establishing
unprecedented standards for producing high-quality, varied outputs. Unlike Generative …

Applying atomistic neural networks to bias conformer ensembles towards bioactive-like conformations

B Baillif, J Cole, I Giangreco, P McCabe… - Journal of …, 2023 - Springer
Identifying bioactive conformations of small molecules is an essential process for virtual
screening applications relying on three-dimensional structure such as molecular docking …

TumFlow: An AI Model for Predicting New Anticancer Molecules

D Rigoni, S Yaddehige, N Bianchi, A Sperduti… - International Journal of …, 2024 - mdpi.com
Melanoma is the fifth most common cancer in the United States. Conventional drug
discovery methods are inherently time-consuming and costly, which imposes significant …

3D Conformational Generative Models for Biological Structures Using Graph Information-Embedded Relative Coordinates

M Xu, W Huang, M Xu, J Lei, H Chen - Molecules, 2022 - mdpi.com
Developing molecular generative models for directly generating 3D conformation has
recently become a hot research area. Here, an autoencoder based generative model was …