D-CryptO: deep learning-based analysis of colon organoid morphology from brightfield images

L Abdul, J Xu, A Sotra, A Chaudary, J Gao… - Lab on a Chip, 2022 - pubs.rsc.org
Stem cell-derived organoids are a promising tool to model native human tissues as they
resemble human organs functionally and structurally compared to traditional monolayer cell …

Phenotypic analysis of complex bioengineered 3D models

A Ravichandran, V Mahajan, T Van de Kemp… - Trends in Cell …, 2025 - cell.com
With advances in underlying technologies such as complex multicellular systems, synthetic
materials, and bioengineering techniques, we can now generate in vitro miniaturized human …

Model Organoids: Integrated Frameworks for the Next Frontier of Healthcare Advancements

R Bhattacharya, D Bose, T Kaur, R Patel… - Stem Cell Reviews and …, 2024 - Springer
The morphogenetic events leading to tissue formation can be recapitulated using organoids,
which allows studying new diseases and modelling personalized medicines. In this review …

High-throughput deconvolution of 3D organoid dynamics at cellular resolution for cancer pharmacology with Cellos

P Mukashyaka, P Kumar, DJ Mellert, S Nicholas… - Nature …, 2023 - nature.com
Abstract Three-dimensional (3D) organoid cultures are flexible systems to interrogate
cellular growth, morphology, multicellular spatial architecture, and cellular interactions in …

Development of a deep learning based image processing tool for enhanced organoid analysis

T Park, TK Kim, YD Han, KA Kim, H Kim, HS Kim - Scientific reports, 2023 - nature.com
Contrary to 2D cells, 3D organoid structures are composed of diverse cell types and exhibit
morphologies of various sizes. Although researchers frequently monitor morphological …

Deep-Orga: An improved deep learning-based lightweight model for intestinal organoid detection

B Leng, H Jiang, B Wang, J Wang, G Luo - Computers in Biology and …, 2024 - Elsevier
Problem Organoids are 3D cultures that are commonly used for biological and medical
research in vitro due to their functional and structural similarity to source organs. The …

[HTML][HTML] Combining Mitomycin C with inhibition of BAD phosphorylation enhances apoptotic cell death in advanced cervical cancer

L Wang, X Zhang, S Chen, Q Ye, B Basappa, T Zhu… - Translational …, 2024 - Elsevier
Abstract Objective Mitomycin C (MMC), a DNA-damaging chemotherapeutic, is commonly
used clinically for recurrent cervical carcinoma (CC), either alone or in combination. MMC …

In-silico and in-vitro morphometric analysis of intestinal organoids

S Montes-Olivas, D Legge, A Lund… - PLoS Computational …, 2023 - journals.plos.org
Organoids offer a powerful model to study cellular self-organisation, the growth of specific
tissue morphologies in-vitro, and to assess potential medical therapies. However, the …

Self-Supervised Versus Supervised Training for Segmentation of Organoid Images

A Haja, E Brouwer, L Schomaker - arXiv preprint arXiv:2311.11198, 2023 - arxiv.org
The process of annotating relevant data in the field of digital microscopy can be both time-
consuming and especially expensive due to the required technical skills and human-expert …

Development and validation of the Normalized Organoid Growth Rate (NOGR) metric in brightfield imaging-based assays

C Deben, E Cardenas De La Hoz… - Communications …, 2024 - nature.com
This study focuses on refining growth-rate-based drug response metrics for patient-derived
tumor organoid screening using brightfield live-cell imaging. Traditional metrics like …