Mechanistic insights into precursor messenger RNA splicing by the spliceosome

Y Shi - Nature reviews Molecular cell biology, 2017 - nature.com
Precursor messenger RNA (pre-mRNA) splicing is an essential step in the flow of
information from DNA to protein in all eukaryotes. Research over the past four decades has …

[HTML][HTML] Mechanical devices of the spliceosome: motors, clocks, springs, and things

JP Staley, C Guthrie - Cell, 1998 - cell.com
). Although introns needed to be removed with single-nucleotide precision to avoid
introducing catastrophic errors of frame, they contained few conserved sequences, varied …

RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites

JM Engreitz, K Sirokman, P McDonel, AA Shishkin… - Cell, 2014 - cell.com
Intermolecular RNA-RNA interactions are used by many noncoding RNAs (ncRNAs) to
achieve their diverse functions. To identify these contacts, we developed a method based on …

The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: causes and consequences

M Krawczak, J Reiss, DN Cooper - Human genetics, 1992 - Springer
A total of 101 different examples of point mutations, which lie in the vicinity of mRNA splice
junctions, and which have been held to be responsible for a human genetic disease by …

Structure of a transcribing RNA polymerase II–U1 snRNP complex

S Zhang, S Aibara, SM Vos, DE Agafonov, R Lührmann… - Science, 2021 - science.org
To initiate cotranscriptional splicing, RNA polymerase II (Pol II) recruits the U1 small nuclear
ribonucleoprotein particle (U1 snRNP) to nascent precursor messenger RNA (pre-mRNA) …

Prediction of human mRNA donor and acceptor sites from the DNA sequence

S Brunak, J Engelbrecht, S Knudsen - Journal of molecular biology, 1991 - Elsevier
Artificial neural networks have been applied to the prediction of splice site location in human
pre-mRNA. A joint prediction scheme where prediction of transition regions between introns …

Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter

DA Melton, PA Krieg, MR Rebagliati… - Nucleic acids …, 1984 - academic.oup.com
A simple and efficient method for synthesizing pure single stranded RNAs of virtually any
structure is described. This in vitro transcription system is based on the unusually specific …

Spliceostatin A targets SF3b and inhibits both splicing and nuclear retention of pre-mRNA

D Kaida, H Motoyoshi, E Tashiro, T Nojima… - Nature chemical …, 2007 - nature.com
The removal of intervening sequences from transcripts is catalyzed by the spliceosome, a
multicomponent complex that assembles on the newly synthesized pre-mRNA. Pre-mRNA …

Molecular mechanisms of pre-mRNA splicing through structural biology of the spliceosome

C Yan, R Wan, Y Shi - Cold Spring Harbor perspectives …, 2019 - cshperspectives.cshlp.org
Precursor messenger RNA (pre-mRNA) splicing is executed by the spliceosome. In the past
3 years, cryoelectron microscopy (cryo-EM) structures have been elucidated for a majority of …

Splice site selection, rate of splicing, and alternative splicing on nascent transcripts.

AL Beyer, YN Osheim - Genes & development, 1988 - genesdev.cshlp.org
Based on ultrastructural analysis of actively transcribing genes seen in electron
micrographs, we present evidence that pre-mRNA splicing occurs with a reasonable …