[HTML][HTML] Evolution of plant genome architecture
We have witnessed an explosion in our understanding of the evolution and structure of plant
genomes in recent years. Here, we highlight three important emergent realizations:(1) that …
genomes in recent years. Here, we highlight three important emergent realizations:(1) that …
[HTML][HTML] Crop breeding chips and genotyping platforms: progress, challenges, and perspectives
There is a rapidly rising trend in the development and application of molecular marker
assays for gene mapping and discovery in field crops and trees. Thus far, more than 50 SNP …
assays for gene mapping and discovery in field crops and trees. Thus far, more than 50 SNP …
[HTML][HTML] Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species
Effective utilization of wild relatives is key to overcoming challenges in genetic improvement
of cultivated tomato, which has a narrow genetic basis; however, current efforts to decipher …
of cultivated tomato, which has a narrow genetic basis; however, current efforts to decipher …
[HTML][HTML] Pangenomic analysis identifies structural variation associated with heat tolerance in pearl millet
Pearl millet is an important cereal crop worldwide and shows superior heat tolerance. Here,
we developed a graph-based pan-genome by assembling ten chromosomal genomes with …
we developed a graph-based pan-genome by assembling ten chromosomal genomes with …
[HTML][HTML] Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations
P Qin, H Lu, H Du, H Wang, W Chen, Z Chen, Q He… - Cell, 2021 - cell.com
Structural variations (SVs) and gene copy number variations (gCNVs) have contributed to
crop evolution, domestication, and improvement. Here, we assembled 31 high-quality …
crop evolution, domestication, and improvement. Here, we assembled 31 high-quality …
Horizontal gene transfer of Fhb7 from fungus underlies Fusarium head blight resistance in wheat
INTRODUCTION Fusarium head blight (FHB) is a fungal disease that devastates global
wheat production, with losses of billions of dollars annually. Unlike foliar diseases, FHB …
wheat production, with losses of billions of dollars annually. Unlike foliar diseases, FHB …
LTR_retriever: a highly accurate and sensitive program for identification of long terminal repeat retrotransposons
Long terminal repeat retrotransposons (LTR-RTs) are prevalent in plant genomes. The
identification of LTR-RTs is critical for achieving high-quality gene annotation. Based on the …
identification of LTR-RTs is critical for achieving high-quality gene annotation. Based on the …
[HTML][HTML] Genome sequence of the progenitor of the wheat D genome Aegilops tauschii
Aegilops tauschii is the diploid progenitor of the D genome of hexaploid wheat (Triticum
aestivum, genomes AABBDD) and an important genetic resource for wheat,,. The large size …
aestivum, genomes AABBDD) and an important genetic resource for wheat,,. The large size …
[HTML][HTML] Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
The genus Oryza is a model system for the study of molecular evolution over time scales
ranging from a few thousand to 15 million years. Using 13 reference genomes spanning the …
ranging from a few thousand to 15 million years. Using 13 reference genomes spanning the …
[HTML][HTML] Chloranthus genome provides insights into the early diversification of angiosperms
Chloranthales remain the last major mesangiosperm lineage without a nuclear genome
assembly. We therefore assemble a high-quality chromosome-level genome of Chloranthus …
assembly. We therefore assemble a high-quality chromosome-level genome of Chloranthus …