Genetic tool development in marine protists: emerging model organisms for experimental cell biology

D Faktorová, RER Nisbet, JA Fernández Robledo… - Nature …, 2020 - nature.com
Diverse microbial ecosystems underpin life in the sea. Among these microbes are many
unicellular eukaryotes that span the diversity of the eukaryotic tree of life. However, genetic …

[图书][B] Marine microbiology: ecology & applications

CB Munn - 2019 - taylorfrancis.com
The third edition of this bestselling text has been rigorously updated to reflect major new
discoveries and concepts since 2011, especially progress due to extensive application of …

Leveraging single-cell genomics to expand the fungal tree of life

SR Ahrendt, CA Quandt, D Ciobanu, A Clum… - Nature …, 2018 - nature.com
Environmental DNA surveys reveal that most fungal diversity represents uncultured species.
We sequenced the genomes of eight uncultured species across the fungal tree of life using a …

Combining morphology, behaviour and genomics to understand the evolution and ecology of microbial eukaryotes

PJ Keeling - … Transactions of the Royal Society B, 2019 - royalsocietypublishing.org
Microbial eukaryotes (protists) are structurally, developmentally and behaviourally more
complex than their prokaryotic cousins. This complexity makes it more difficult to translate …

Inorganic carbon concentrating mechanisms in free‐living and symbiotic dinoflagellates and chromerids

JA Raven, DJ Suggett, M Giordano - Journal of phycology, 2020 - Wiley Online Library
Photosynthetic dinoflagellates are ecologically and biogeochemically important in marine
and freshwater environments. However, surprisingly little is known of how this group …

Tiara: deep learning-based classification system for eukaryotic sequences

M Karlicki, S Antonowicz, A Karnkowska - Bioinformatics, 2022 - academic.oup.com
Motivation With a large number of metagenomic datasets becoming available, eukaryotic
metagenomics emerged as a new challenge. The proper classification of eukaryotic nuclear …

Microscopic marine invertebrates are reservoirs for cryptic and diverse protists and fungi

CC Holt, V Boscaro, NWL Van Steenkiste, M Herranz… - Microbiome, 2022 - Springer
Background Microbial symbioses in marine invertebrates are commonplace. However,
characterizations of invertebrate microbiomes are vastly outnumbered by those of …

Water masses shape pico-nano eukaryotic communities of the Weddell Sea

O Flegontova, P Flegontov, N Jachníková… - Communications …, 2023 - nature.com
Polar oceans belong to the most productive and rapidly changing environments, yet our
understanding of this fragile ecosystem remains limited. Here we present an analysis of a …

Novel phylogenetic methods are needed for understanding gene function in the era of mega-scale genome sequencing

LG Nagy, Z Merényi, B Hegedüs… - Nucleic acids research, 2020 - academic.oup.com
Ongoing large-scale genome sequencing projects are forecasting a data deluge that will
almost certainly overwhelm current analytical capabilities of evolutionary genomics. In …

Seasonal succession of small planktonic eukaryotes inhabiting surface waters of a coastal upwelling system

M Hernández‐Ruiz, E Barber‐Lluch… - Environmental …, 2018 - Wiley Online Library
Summary Small eukaryotes (0.2–20 μm cell‐size) represent a significant fraction of the
microbial plankton community in shelf waters of NW‐Spain. The community composition of …