Systems pharmacology for investigation of the mechanisms of action of traditional Chinese medicine in drug discovery

W Zhang, Y Huai, Z Miao, A Qian… - Frontiers in pharmacology, 2019 - frontiersin.org
As a traditional medical intervention in Asia and a complementary and alternative medicine
in western countries, traditional Chinese medicine (TCM) has attracted global attention in …

Comparison study of computational prediction tools for drug-target binding affinities

M Thafar, AB Raies, S Albaradei, M Essack… - Frontiers in …, 2019 - frontiersin.org
The drug development is generally arduous, costly, and success rates are low. Thus, the
identification of drug-target interactions (DTIs) has become a crucial step in early stages of …

Predicting drug–disease associations through layer attention graph convolutional network

Z Yu, F Huang, X Zhao, W Xiao… - Briefings in …, 2021 - academic.oup.com
Background: Determining drug–disease associations is an integral part in the process of
drug development. However, the identification of drug–disease associations through wet …

SimBoost: a read-across approach for predicting drug–target binding affinities using gradient boosting machines

T He, M Heidemeyer, F Ban, A Cherkasov… - Journal of …, 2017 - Springer
Computational prediction of the interaction between drugs and targets is a standing
challenge in the field of drug discovery. A number of rather accurate predictions were …

A Bayesian machine learning approach for drug target identification using diverse data types

NS Madhukar, PK Khade, L Huang, K Gayvert… - Nature …, 2019 - nature.com
Drug target identification is a crucial step in development, yet is also among the most
complex. To address this, we develop BANDIT, a Bayesian machine-learning approach that …

Neighborhood regularized logistic matrix factorization for drug-target interaction prediction

Y Liu, M Wu, C Miao, P Zhao, XL Li - PLoS computational biology, 2016 - journals.plos.org
In pharmaceutical sciences, a crucial step of the drug discovery process is the identification
of drug-target interactions. However, only a small portion of the drug-target interactions have …

DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniques

MA Thafar, RS Olayan, H Ashoor, S Albaradei… - Journal of …, 2020 - Springer
In silico prediction of drug–target interactions is a critical phase in the sustainable drug
development process, especially when the research focus is to capitalize on the …

Tools for in silico target fishing

A Cereto-Massagué, MJ Ojeda, C Valls, M Mulero… - Methods, 2015 - Elsevier
Computational target fishing methods are designed to identify the most probable target of a
query molecule. This process may allow the prediction of the bioactivity of a compound, the …

DeepGS: Deep representation learning of graphs and sequences for drug-target binding affinity prediction

X Lin, K Zhao, T Xiao, Z Quan, ZJ Wang, PS Yu - ECAI 2020, 2020 - ebooks.iospress.nl
Accurately predicting drug-target binding affinity (DTA) in silico is a key task in drug
discovery. Most of the conventional DTA prediction methods are simulation-based, which …

Machine learning prediction of oncology drug targets based on protein and network properties

Z Dezső, M Ceccarelli - BMC bioinformatics, 2020 - Springer
Background The selection and prioritization of drug targets is a central problem in drug
discovery. Computational approaches can leverage the growing number of large-scale …