The power and promise of RNA‐seq in ecology and evolution

EV Todd, MA Black, NJ Gemmell - Molecular ecology, 2016 - Wiley Online Library
Reference is regularly made to the power of new genomic sequencing approaches. Using
powerful technology, however, is not the same as having the necessary power to address a …

A framework for incorporating evolutionary genomics into biodiversity conservation and management

A Hoffmann, P Griffin, S Dillon, R Catullo… - Climate Change …, 2015 - Springer
Evolutionary adaptation drives biodiversity. So far, however, evolutionary thinking has had
limited impact on plans to counter the effects of climate change on biodiversity and …

CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

YJ Kang, DC Yang, L Kong, M Hou… - Nucleic acids …, 2017 - academic.oup.com
With advances in next-generation sequencing technologies, numerous novel transcripts in a
large number of organisms have been identified. With the goal of fast, accurate assessment …

[PDF][PDF] Machine intelligence and the data-driven future of marine science

K Malde, NO Handegard, L Eikvil… - ICES Journal of Marine …, 2020 - academic.oup.com
Oceans constitute over 70% of the earth's surface, and the marine environment and
ecosystems are central to many global challenges. Not only are the oceans an important …

Detecting signatures of positive selection in non-model species using genomic data

H Weigand, F Leese - Zoological journal of the Linnean Society, 2018 - academic.oup.com
Understanding how natural selection shapes genetic variation in populations is of
paramount importance in evolutionary biology. Affordable high-throughput sequencing now …

Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish

H Liu, MS Lamm, K Rutherford, MA Black… - Biology of Sex …, 2015 - Springer
Background Teleost fishes exhibit remarkably diverse and plastic sexual developmental
patterns. One of the most astonishing is the rapid socially controlled female-to-male …

Supplementing Sulfate‐Based Alginate Polysaccharide Improves Pacific White Shrimp (Litopenaeus vannamei) Fed Fishmeal Replacement with Cottonseed Protein …

G Chen, B Liu, J Chen, H Liu, B Tan… - Aquaculture …, 2022 - Wiley Online Library
Sulfate‐based alginate polysaccharide (SAP) is a novelty marine prebiotic. To investigate
the beneficial effects of SAP in Pacific white shrimp (Litopenaeus vannamei) fed low …

Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation

Y Hara, K Tatsumi, M Yoshida, E Kajikawa, H Kiyonari… - BMC genomics, 2015 - Springer
Background RNA-seq enables gene expression profiling in selected spatiotemporal
windows and yields massive sequence information with relatively low cost and time …

Comprehensive Transcriptome Analysis Reveals Accelerated Genic Evolution in a Tibet Fish, Gymnodiptychus pachycheilus

L Yang, Y Wang, Z Zhang, S He - Genome biology and …, 2015 - academic.oup.com
Elucidating the genetic mechanisms of organismal adaptation to the Tibetan Plateau at a
genomic scale can provide insights into the process of adaptive evolution. Many highland …

Evaluating restriction enzyme selection for reduced representation sequencing in conservation genomics

A López, C Carreras, M Pascual… - Molecular Ecology …, 2023 - Wiley Online Library
Conservation genomic studies in non‐model organisms generally rely on reduced
representation sequencing techniques based on restriction enzymes to identify population …