Listeria monocytogenes in stone fruits linked to a multistate outbreak: enumeration of cells and whole-genome sequencing

Y Chen, LS Burall, Y Luo, R Timme… - Applied and …, 2016 - Am Soc Microbiol
In 2014, the identification of stone fruits contaminated with Listeria monocytogenes led to the
subsequent identification of a multistate outbreak. Simultaneous detection and enumeration …

Contamination Status of Salmonella spp., Shigella spp. and Campylobacter spp. in Surface and Groundwater of the Kelani River Basin, Sri Lanka

M Mahagamage, M Pathirage, PM Manage - Water, 2020 - mdpi.com
Waterborne diseases are a global problem that causes more than 2.2 million deaths
annually. Therefore, the present study was focused on microbiological contamination of both …

Genome-Wide Methylation Patterns in Salmonella enterica Subsp. enterica Serovars

C Pirone-Davies, M Hoffmann, RJ Roberts… - PloS one, 2015 - journals.plos.org
The methylation of DNA bases plays an important role in numerous biological processes
including development, gene expression, and DNA replication. Salmonella is an important …

Effect of post-harvest processing methods on the microbial safety of edible seaweed

JG Vorse, CT Moody, LC Massoia, JJ Perry… - Journal of Applied …, 2023 - Springer
The American seaweed industry is growing, primarily into the edible sector, and more
seaweed products are available for human consumption. It is necessary to evaluate the …

Lactic acid bacteria decrease Salmonella enterica Javiana virulence and modulate host inflammation during infection of an intestinal epithelial cell line

KM Burkholder, DH Fletcher, L Gileau… - Pathogens and …, 2019 - academic.oup.com
Salmonella enterica Javiana is a leading cause of severe foodborne Salmonellosis. Despite
its emergence as a major foodborne pathogen, little is known of how S. Javiana interacts …

The Majority of Typhoid Toxin-Positive Salmonella Serovars Encode ArtB, an Alternate Binding Subunit

A Gaballa, RA Cheng, AS Harrand, AR Cohn… - Msphere, 2021 - Am Soc Microbiol
Salmonella enterica encodes a wide array of virulence factors. One novel virulence factor,
an A2B5 toxin known as the typhoid toxin (TT), was recently identified among a variety of S …

Biomarker identification from next-generation sequencing data for pathogen bacteria characterization and surveillance

W Zhao, JJ Chen, S Foley, Y Wang, S Zhao… - Biomarkers in …, 2015 - Taylor & Francis
Aim: The purpose was to develop an analytical pipeline for specific gene analysis and
biomarker discovery from next generation sequencing (NGS) data. Materials & methods: As …

Cytotoxic Mechanism of Cytolethal Distending Toxin in Nontyphoidal Salmonella Serovar (Salmonella Javiana) During Macrophage Infection

K Williams, K Gokulan, D Shelman, T Akiyama… - DNA and cell …, 2015 - liebertpub.com
Cytolethal distending toxin B (cdt B) is a conserved virulence factor in Salmonella enterica
serovar Typhi. Here we report the presence and functionality of cdt B in some nontyphoidal …

Identification of virulence factors and antibiotic resistance in Salmonella enterica subsp. enterica serovar Javiana (FARPER-220) isolated from broiler chickens

L Tataje-Lavanda, D Villanueva-Pérez… - Microbiology …, 2023 - Am Soc Microbiol
Genome sequencing of highly virulent Salmonella enterica subsp. enterica serovar Javiana
strain FARPER-220 (ST-1674) isolated from broiler chickens in Peru revealed multiple …

Bit-parallel and SIMD alignment algorithms for biological sequence analysis

J Loving - 2017 - search.proquest.com
High-throughput next-generation sequencing techniques have hugely decreased the cost
and increased the speed of sequencing, resulting in an explosion of sequencing data. This …