Towards a complete map of the human long non-coding RNA transcriptome

B Uszczynska-Ratajczak, J Lagarde… - Nature Reviews …, 2018 - nature.com
Gene maps, or annotations, enable us to navigate the functional landscape of our genome.
They are a resource upon which virtually all studies depend, from single-gene to genome …

[HTML][HTML] 25 years of serving the community with ribosomal RNA gene reference databases and tools

FO Glöckner, P Yilmaz, C Quast, J Gerken… - Journal of …, 2017 - Elsevier
SILVA (lat. forest) is a comprehensive web resource, providing services around up to date,
high-quality datasets of aligned ribosomal RNA gene (rDNA) sequences from the Bacteria …

Thoughts on how to think (and talk) about RNA structure

Q Vicens, JS Kieft - Proceedings of the National Academy of …, 2022 - National Acad Sciences
Recent events have pushed RNA research into the spotlight. Continued discoveries of RNA
with unexpected diverse functions in healthy and diseased cells, such as the role of RNA as …

miRBase: from microRNA sequences to function

A Kozomara, M Birgaoanu… - Nucleic acids …, 2019 - academic.oup.com
Abstract miRBase catalogs, names and distributes microRNA gene sequences. The latest
release of miRBase (v22) contains microRNA sequences from 271 organisms: 38 589 …

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

I Kalvari, J Argasinska, N Quinones-Olvera… - Nucleic acids …, 2018 - academic.oup.com
The Rfam database is a collection of RNA families in which each family is represented by a
multiple sequence alignment, a consensus secondary structure, and a covariance model. In …

LNCipedia 5: towards a reference set of human long non-coding RNAs

PJ Volders, J Anckaert, K Verheggen… - Nucleic acids …, 2019 - academic.oup.com
While long non-coding RNA (lncRNA) research in the past has primarily focused on the
discovery of novel genes, today it has shifted towards functional annotation of this large …

The architecture of the SARS-CoV-2 RNA genome inside virion

C Cao, Z Cai, X Xiao, J Rao, J Chen, N Hu… - Nature …, 2021 - nature.com
SARS-CoV-2 carries the largest single-stranded RNA genome and is the causal pathogen of
the ongoing COVID-19 pandemic. How the SARS-CoV-2 RNA genome is folded in the virion …

[HTML][HTML] A high-resolution map of human RNA translation

SP Chothani, E Adami, AA Widjaja, SR Langley… - Molecular cell, 2022 - cell.com
Translated small open reading frames (smORFs) can have important regulatory roles and
encode microproteins, yet their genome-wide identification has been challenging. We …

Non‐coding RNA analysis using the Rfam database

I Kalvari, EP Nawrocki, J Argasinska… - Current protocols in …, 2018 - Wiley Online Library
Rfam is a database of non‐coding RNA families in which each family is represented by a
multiple sequence alignment, a consensus secondary structure, and a covariance model …

RMVar: an updated database of functional variants involved in RNA modifications

X Luo, H Li, J Liang, Q Zhao, Y Xie, J Ren… - Nucleic acids …, 2021 - academic.oup.com
Distinguishing the few disease-related variants from a massive number of passenger
variants is a major challenge. Variants affecting RNA modifications that play critical roles in …