Cryptic species as a window into the paradigm shift of the species concept

C Fišer, CT Robinson, F Malard - Molecular Ecology, 2018 - Wiley Online Library
The species concept is the cornerstone of biodiversity science, and any paradigm shift in the
delimitation of species affects many research fields. Many biologists now are embracing a …

Climate change and alpine stream biology: progress, challenges, and opportunities for the future

S Hotaling, DS Finn, J Joseph Giersch… - Biological …, 2017 - Wiley Online Library
In alpine regions worldwide, climate change is dramatically altering ecosystems and
affecting biodiversity in many ways. For streams, receding alpine glaciers and snowfields …

Comparison of methods for molecular species delimitation across a range of speciation scenarios

A Luo, C Ling, SYW Ho, CD Zhu - Systematic Biology, 2018 - academic.oup.com
Species are fundamental units in biological research and can be defined on the basis of
various operational criteria. There has been growing use of molecular approaches for …

Unguided species delimitation using DNA sequence data from multiple loci

Z Yang, B Rannala - Molecular Biology and Evolution, 2014 - academic.oup.com
A method was developed for simultaneous Bayesian inference of species delimitation and
species phylogeny using the multispecies coalescent model. The method eliminates the …

Species delimitation using genome-wide SNP data

AD Leaché, MK Fujita, VN Minin… - Systematic …, 2014 - academic.oup.com
The multispecies coalescent has provided important progress for evolutionary inferences,
including increasing the statistical rigor and objectivity of comparisons among competing …

[HTML][HTML] The first wave of the COVID-19 epidemic in Spain was associated with early introductions and fast spread of a dominating genetic variant

MG López, Á Chiner-Oms, D García de Viedma… - Nature …, 2021 - nature.com
Abstract The coronavirus disease 2019 (COVID-19) pandemic has affected the world
radically since 2020. Spain was one of the European countries with the highest incidence …

Borneo and Indochina are major evolutionary hotspots for Southeast Asian biodiversity

M De Bruyn, B Stelbrink, RJ Morley, R Hall… - Systematic …, 2014 - academic.oup.com
Abstract Tropical Southeast (SE) Asia harbors extraordinary species richness and in its
entirety comprises four of the Earth's 34 biodiversity hotspots. Here, we examine the …

Species delimitation with gene flow

ND Jackson, BC Carstens, AE Morales… - Systematic …, 2017 - academic.oup.com
Species are commonly thought to be evolutionarily independent in a way that populations
within a species are not. In recent years, studies that seek to identify evolutionarily …

Guidelines for DNA taxonomy, with a focus on the meiofauna

D Fontaneto, JF Flot, CQ Tang - Marine Biodiversity, 2015 - Springer
Describing biological diversity is a challenging endeavour, especially for the small, cryptic
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …

DISSECT: an assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent

G Jones, Z Aydin, B Oxelman - Bioinformatics, 2015 - academic.oup.com
Motivation: The multispecies coalescent model provides a formal framework for the
assignment of individual organisms to species, where the species are modeled as the …