Chromosomal organization of transcription: in a nutshell

S Meyer, S Reverchon, W Nasser, G Muskhelishvili - Current genetics, 2018 - Springer
Early studies of transcriptional regulation focused on individual gene promoters defined
specific transcription factors as central agents of genetic control. However, recent genome …

Quantitative studies for cell-division cycle control

Y Arata, H Takagi - Frontiers in Physiology, 2019 - frontiersin.org
The cell-division cycle (CDC) is driven by cyclin-dependent kinases (CDKs). Mathematical
models based on molecular networks, as revealed by molecular and genetic studies, have …

Cell cycle Start is coupled to entry into the yeast metabolic cycle across diverse strains and growth rates

AJ Burnetti, M Aydin, NE Buchler - Molecular biology of the cell, 2016 - Am Soc Cell Biol
Cells have evolved oscillators with different frequencies to coordinate periodic processes.
Here we studied the interaction of two oscillators, the cell division cycle (CDC) and the yeast …

INO80 chromatin remodeling coordinates metabolic homeostasis with cell division

GJ Gowans, AN Schep, KM Wong, DA King… - Cell reports, 2018 - cell.com
Adaptive survival requires the coordination of nutrient availability with expenditure of cellular
resources. For example, in nutrient-limited environments, 50% of all S. cerevisiae genes …

Temporal metabolic partitioning of the yeast and protist cellular networks: the cell is a global scale-invariant (fractal or self-similar) multioscillator

D Lloyd, DB Murray, MA Aon… - … of biomedical optics, 2019 - spiedigitallibrary.org
Britton Chance, electronics expert when a teenager, became an enthusiastic student of
biological oscillations, passing on this enthusiasm to many students and colleagues …

An appreciation of the prescience of Don Gilbert (1930–2011): master of the theory and experimental unravelling of biochemical and cellular oscillatory dynamics

K Gilbert, KD Hammond, VY Brodsky… - Cell Biology …, 2020 - Wiley Online Library
Abstract We review Don Gilbert's pioneering seminal contributions that both detailed the
mathematical principles and the experimental demonstration of several of the key dynamic …

Saccharomyces cerevisiae: Oscillatory Orchestration of Growth

D Lloyd - Advancing Frontiers in Mycology & Mycotechnology …, 2019 - Springer
It is important to understand the structure and function of Baker's yeast as it serves as an
excellent model, not only for many other fungi but also for almost all eukaryotic cell systems …

Oscillations, rhythms and synchronized time bases: the key signatures of life

D Lloyd - Physics of Biological Oscillators: New Insights into Non …, 2021 - Springer
The dynamic complexity of the living state as evident on viewing cells microscopically defies
immediate comprehension. Experiment and theory now allows us to approach some of the …

The cell growth cycle in budding yeast: testing hypotheses

R Machné, SH Bernhart, IM Axmann, PF Stadler… - bioRxiv, 2021 - biorxiv.org
Metabolic oscillations in budding yeast percolate throughout cellular physiology. The
transcriptome oscillates between expression of genes encoding for biosynthesis and growth …

[PDF][PDF] Pulse-Width Modulation of Gene

R Machné, DB Murray, SH Bernhart, IM Axmann - academia.edu
When yeast cultures are grown to a high cell density they tend to show collective metabolic
dynam-30 ics, alternating between phases of high oxygen consumption (HOC) and low …