Miniature inverted-repeat transposable elements: discovery, distribution, and activity

I Fattash, R Rooke, A Wong, C Hui, T Luu… - …, 2013 - cdnsciencepub.com
Eukaryotic organisms have dynamic genomes, with transposable elements (TEs) as a major
contributing factor. Although the large autonomous TEs can significantly shape genomic …

Pangenome: A promising resource for noncoding RNA discovery in plants

M Tahir ul Qamar, X Zhu, MS Khan, F Xing… - The Plant …, 2020 - Wiley Online Library
Plant genomes contain both proteincoding and noncoding sequences including
transposable elements (TEs) and noncoding RNAs (ncRNAs). The ncRNAs are recognized …

Miniature inverted–repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and …

C Lu, J Chen, Y Zhang, Q Hu, W Su… - Molecular biology and …, 2012 - academic.oup.com
Miniature inverted–repeat transposable elements (MITEs) are predicted to play important
roles on genome evolution. We developed a BLASTN-based approach for de novo …

Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians

MI Tenaillon, MB Hufford, BS Gaut… - Genome biology and …, 2011 - academic.oup.com
The genome of maize (Zea mays ssp. mays) consists mostly of transposable elements (TEs)
and varies in size among lines. This variation extends to other species in the genus Zea …

Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster

RS Linheiro, CM Bergman - PloS one, 2012 - journals.plos.org
Transposable elements are mobile DNA sequences that integrate into host genomes using
diverse mechanisms with varying degrees of target site specificity. While the target site …

Comparative analysis of miniature inverted–repeat transposable elements (MITEs) and long terminal repeat (LTR) retrotransposons in six Citrus species

Y Liu, M Tahir ul Qamar, JW Feng, Y Ding, S Wang… - BMC plant biology, 2019 - Springer
Background Miniature inverted-repeat transposable elements (MITEs) and long terminal
repeat (LTR) retrotransposons are ubiquitous in plants genomes, and highly important in …

BraSto, a Stowaway MITE from Brassica: recently active copies preferentially accumulate in the gene space

V Sarilar, A Marmagne, P Brabant, J Joets, K Alix - Plant molecular biology, 2011 - Springer
We characterized a Brassica miniature inverted repeat transposable element (MITE) from
the Stowaway superfamily, designated BraSto (Bra ssica Sto waway). BraSto copy number …

Insertion of a miniature inverted-repeat transposable element into the promoter of OsTCP4 results in more tillers and a lower grain size in rice

H Zhang, J Zhang, P Xu, M Li, Y Li - Journal of Experimental …, 2024 - academic.oup.com
Abstract A class I PCF type protein, TCP4, was identified as a transcription factor associated
with both grain size and tillering through a DNA pull-down-MS assay combined with a …

Identification and Evolution of the Silkworm Helitrons and their Contribution to Transcripts

MINJIN Han, YH Shen, MSHU Xu, HYU Liang… - DNA …, 2013 - academic.oup.com
In this study, we developed a structure-based approach to identify Helitrons in four
lepidopterans and systematically analysed Helitrons in the silkworm genome. We found that …

The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story

A Bousios, YAI Kourmpetis, P Pavlidis… - The Plant …, 2012 - Wiley Online Library
Sireviruses are one of the three genera of Copia long terminal repeat (LTR)
retrotransposons, exclusive to and highly abundant in plants, and with a unique, among …