Zebrafish: a model system for the study of human disease

K Dooley, LI Zon - Current opinion in genetics & development, 2000 - Elsevier
The zebrafish (Danio rerio) is a powerful model organism for the study of vertebrate biology,
being well suited to both developmental and genetic analysis. Large-scale genetic screens …

A primer for morpholino use in zebrafish

BR Bill, AM Petzold, KJ Clark, LA Schimmenti… - Zebrafish, 2009 - liebertpub.com
Morpholino oligonucleotides are the most common anti-sense “knockdown” technique used
in zebrafish (Danio rerio). This review discusses common practices for the design …

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000

A Bairoch, R Apweiler - Nucleic acids research, 2000 - academic.oup.com
SWISS-PROT is a curated protein sequence database which strives to provide a high level
of annotation (such as the description of the function of a protein, its domains structure, post …

The state of the art of the zebrafish model for toxicology and toxicologic pathology research—advantages and current limitations

JM Spitsbergen, ML Kent - Toxicologic pathology, 2003 - journals.sagepub.com
The zebrafish (Danio rerio) is now the pre-eminent vertebrate model system for clarification
of the roles of specific genes and signaling pathways in development. The zebrafish …

RefSeq and LocusLink: NCBI gene-centered resources

KD Pruitt, DR Maglott - Nucleic acids research, 2001 - academic.oup.com
Thousands of genes have been painstakingly identified and characterized a few genes at a
time. Many thousands more are being predicted by large scale cDNA and genomic …

Live imaging reveals differing roles of macrophages and neutrophils during zebrafish tail fin regeneration

L Li, B Yan, YQ Shi, WQ Zhang, ZL Wen - Journal of Biological Chemistry, 2012 - ASBMB
Background: Macrophages and neutrophils are key phagocytes in regeneration. Results:
Neutrophils are the primary phagocytes in the inflammatory stage and are dispensable for …

Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation

IT Fiddes, J Armstrong, M Diekhans… - Genome …, 2018 - genome.cshlp.org
The recent introductions of low-cost, long-read, and read-cloud sequencing technologies
coupled with intense efforts to develop efficient algorithms have made affordable, high …

A noncoding antisense RNA in tie-1 locus regulates tie-1 function in vivo

K Li, Y Blum, A Verma, Z Liu, K Pramanik… - Blood, The Journal …, 2010 - ashpublications.org
Recently, messenger RNAs in eukaryotes have shown to associate with antisense (AS)
transcript partners that are often referred to as long noncoding RNAs (lncRNAs) whose …

A molecular toolbox for genetic manipulation of zebrafish

WA Sassen, RW Köster - Advances in Genomics and Genetics, 2015 - Taylor & Francis
Zebrafish is an emerging model system in biomedical research. The high degree of
evolutionary conservation in genetics as well as in development allows deciphering the …

NCBI Reference Sequence project: update and current status

KD Pruitt, T Tatusova, DR Maglott - Nucleic acids research, 2003 - academic.oup.com
The goal of the NCBI Reference Sequence (RefSeq) project is to provide the single best non-
redundant and comprehensive collection of naturally occurring biological molecules …