Consensus guidelines for the use and interpretation of angiogenesis assays

P Nowak-Sliwinska, K Alitalo, E Allen, A Anisimov… - Angiogenesis, 2018 - Springer
The formation of new blood vessels, or angiogenesis, is a complex process that plays
important roles in growth and development, tissue and organ regeneration, as well as …

A survey on applications of deep learning in microscopy image analysis

Z Liu, L Jin, J Chen, Q Fang, S Ablameyko, Z Yin… - Computers in biology …, 2021 - Elsevier
Advanced microscopy enables us to acquire quantities of time-lapse images to visualize the
dynamic characteristics of tissues, cells or molecules. Microscopy images typically vary in …

[HTML][HTML] Computerized cell tracking: Current methods, tools and challenges

N Emami, Z Sedaei, R Ferdousi - Visual Informatics, 2021 - Elsevier
In developmental biology, knowledge of cell structure and their (morpho) dynamic behavior,
leads to a comprehensive understanding of their conducts and the mechanisms in which …

OrganoidTracker: Efficient cell tracking using machine learning and manual error correction

RNU Kok, L Hebert, G Huelsz-Prince, YJ Goos… - PLoS …, 2020 - journals.plos.org
Time-lapse microscopy is routinely used to follow cells within organoids, allowing direct
study of division and differentiation patterns. There is an increasing interest in cell tracking in …

Non-Markovian data-driven modeling of single-cell motility

BG Mitterwallner, C Schreiber, JO Daldrop, JO Rädler… - Physical Review E, 2020 - APS
Trajectories of human breast cancer cells moving on one-dimensional circular tracks are
modeled by the non-Markovian version of the Langevin equation that includes an arbitrary …

ComplexEye: a multi-lens array microscope for high-throughput embedded immune cell migration analysis

Z Cibir, J Hassel, J Sonneck, L Kowitz, A Beer… - Nature …, 2023 - nature.com
Autonomous migration is essential for the function of immune cells such as neutrophils and
plays an important role in numerous diseases. The ability to routinely measure or target it …

Cells use molecular working memory to navigate in changing chemoattractant fields

A Nandan, A Das, R Lott, A Koseska - Elife, 2022 - elifesciences.org
In order to migrate over large distances, cells within tissues and organisms rely on sensing
local gradient cues which are irregular, conflicting, and changing over time and space. The …

Bioimage analysis and cell motility

A Boquet-Pujadas, JC Olivo-Marin, N Guillén - Patterns, 2021 - cell.com
Bioimage analysis (BIA) has historically helped study how and why cells move; biological
experiments evolved in intimate feedback with the most classical image processing …

Dynamic spherical harmonics approach for shape classification of migrating cells

A Medyukhina, M Blickensdorf, Z Cseresnyés, N Ruef… - Scientific reports, 2020 - nature.com
Cell migration involves dynamic changes in cell shape. Intricate patterns of cell shape can
be analyzed and classified using advanced shape descriptors, including spherical …

Quantification of cell migration: metrics selection to model application

Y Hu, ML Becker, RK Willits - Frontiers in Cell and Developmental …, 2023 - frontiersin.org
Cell migration plays an essential role in physiological and pathological states, such as
immune response, tissue generation and tumor development. This phenomenon can occur …