A tutorial for information theory in neuroscience

NM Timme, C Lapish - eneuro, 2018 - eneuro.org
Understanding how neural systems integrate, encode, and compute information is central to
understanding brain function. Frequently, data from neuroscience experiments are …

Bits from brains for biologically inspired computing

M Wibral, JT Lizier, V Priesemann - Frontiers in Robotics and AI, 2015 - frontiersin.org
Inspiration for artificial biologically inspired computing is often drawn from neural systems.
This article shows how to analyze neural systems using information theory with the aim of …

Gene regulatory network inference from single-cell data using multivariate information measures

TE Chan, MPH Stumpf, AC Babtie - Cell systems, 2017 - cell.com
While single-cell gene expression experiments present new challenges for data processing,
the cell-to-cell variability observed also reveals statistical relationships that can be used by …

A statistical framework for neuroimaging data analysis based on mutual information estimated via a gaussian copula

RAA Ince, BL Giordano, C Kayser… - Human brain …, 2017 - Wiley Online Library
We begin by reviewing the statistical framework of information theory as applicable to
neuroimaging data analysis. A major factor hindering wider adoption of this framework in …

[图书][B] Entropy and diversity: the axiomatic approach

T Leinster - 2021 - books.google.com
The global biodiversity crisis is one of humanity's most urgent problems, but even
quantifying biological diversity is a difficult mathematical and conceptual challenge. This …

[HTML][HTML] Stem cell differentiation as a non-Markov stochastic process

PS Stumpf, RCG Smith, M Lenz, A Schuppert, FJ Müller… - Cell Systems, 2017 - cell.com
Pluripotent stem cells can self-renew in culture and differentiate along all somatic lineages
in vivo. While much is known about the molecular basis of pluripotency, the mechanisms of …

Reconciling emergences: An information-theoretic approach to identify causal emergence in multivariate data

FE Rosas, PAM Mediano, HJ Jensen… - PLoS computational …, 2020 - journals.plos.org
The broad concept of emergence is instrumental in various of the most challenging open
scientific questions—yet, few quantitative theories of what constitutes emergent phenomena …

A synergistic core for human brain evolution and cognition

AI Luppi, PAM Mediano, FE Rosas, N Holland… - Nature …, 2022 - nature.com
How does the organization of neural information processing enable humans' sophisticated
cognition? Here we decompose functional interactions between brain regions into …

Neuronal sequences in population bursts encode information in human cortex

W Xie, JH Wittig Jr, JI Chapeton, M El-Kalliny… - Nature, 2024 - nature.com
Neural coding has traditionally been examined through changes in firing rates and latencies
in response to different stimuli,,,–. However, populations of neurons can also exhibit …

Information decomposition of target effects from multi-source interactions: Perspectives on previous, current and future work

JT Lizier, N Bertschinger, J Jost, M Wibral - Entropy, 2018 - mdpi.com
The formulation of the Partial Information Decomposition (PID) framework by Williams and
Beer in 2010 attracted a significant amount of attention to the problem of defining redundant …