Deep learning for cellular image analysis

E Moen, D Bannon, T Kudo, W Graf, M Covert… - Nature …, 2019 - nature.com
Recent advances in computer vision and machine learning underpin a collection of
algorithms with an impressive ability to decipher the content of images. These deep learning …

Advances and opportunities in image analysis of bacterial cells and communities

H Jeckel, K Drescher - FEMS Microbiology Reviews, 2021 - academic.oup.com
The cellular morphology and sub-cellular spatial structure critically influence the function of
microbial cells. Similarly, the spatial arrangement of genotypes and phenotypes in microbial …

Cellpose: a generalist algorithm for cellular segmentation

C Stringer, T Wang, M Michaelos, M Pachitariu - Nature methods, 2021 - nature.com
Many biological applications require the segmentation of cell bodies, membranes and nuclei
from microscopy images. Deep learning has enabled great progress on this problem, but …

Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl

JC Caicedo, A Goodman, KW Karhohs, BA Cimini… - Nature …, 2019 - nature.com
Segmenting the nuclei of cells in microscopy images is often the first step in the quantitative
analysis of imaging data for biological and biomedical applications. Many bioimage analysis …

Test-time augmentation for deep learning-based cell segmentation on microscopy images

N Moshkov, B Mathe, A Kertesz-Farkas, R Hollandi… - Scientific reports, 2020 - nature.com
Recent advancements in deep learning have revolutionized the way microscopy images of
cells are processed. Deep learning network architectures have a large number of …

Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy

T Scherr, K Löffler, M Böhland, R Mikut - PLoS One, 2020 - journals.plos.org
The accurate segmentation and tracking of cells in microscopy image sequences is an
important task in biomedical research, eg, for studying the development of tissues, organs or …

Segmentation and characterization of macerated fibers and vessels using deep learning

S Qamar, AI Baba, S Verger, M Andersson - Plant Methods, 2024 - Springer
Purpose Wood comprises different cell types, such as fibers, tracheids and vessels, defining
its properties. Studying cells' shape, size, and arrangement in microscopy images is crucial …

NAS-SGAN: a semi-supervised generative adversarial network model for atypia scoring of breast cancer histopathological images

A Das, VK Devarampati, MS Nair - IEEE Journal of Biomedical …, 2021 - ieeexplore.ieee.org
Nuclear atypia scoring (NAS), forms a significant factor in determining individualized
treatment plans and also for the prognosis of the disease. Automation of cancer grading …

[HTML][HTML] Deep learning in cell image analysis

J Xu, D Zhou, D Deng, J Li, C Chen, X Liao… - Intelligent …, 2022 - spj.science.org
Cell images, which have been widely used in biomedical research and drug discovery,
contain a great deal of valuable information that encodes how cells respond to external …

AnnotatorJ: an ImageJ plugin to ease hand annotation of cellular compartments

R Hollandi, Á Diósdi, G Hollandi… - Molecular biology of …, 2020 - Am Soc Cell Biol
AnnotatorJ combines single-cell identification with deep learning (DL) and manual
annotation. Cellular analysis quality depends on accurate and reliable detection and …