Metabolomics: a systems biology approach for enhancing heat stress tolerance in plants

A Raza - Plant cell reports, 2022 - Springer
Key message Comprehensive metabolomic investigations provide a large set of stress-
related metabolites and metabolic pathways, advancing crops under heat stress conditions …

[HTML][HTML] How close are we to complete annotation of metabolomes?

MR Viant, IJ Kurland, MR Jones, WB Dunn - Current opinion in chemical …, 2017 - Elsevier
Highlights•No exhaustive experimental characterisation of an organism's metabolome
reported.•Deep metabolome annotation strategies based on multi-platform …

Mass spectrometry in plant-omics

E Gemperline, C Keller, L Li - Analytical chemistry, 2016 - ACS Publications
Plant-omics is rapidly becoming an important field of study in the scientific community due to
the urgent need to address many of the most important questions facing humanity today with …

HEAT INDUCIBLE LIPASE1 Remodels Chloroplastic Monogalactosyldiacylglycerol by Liberating α-Linolenic Acid in Arabidopsis Leaves under Heat Stress

Y Higashi, Y Okazaki, K Takano, F Myouga… - The Plant …, 2018 - academic.oup.com
Under heat stress, polyunsaturated acyl groups, such as α-linolenate (18: 3) and
hexadecatrienoate (16: 3), are removed from chloroplastic glycerolipids in various plant …

Computational methods to identify metabolic sub-networks based on metabolomic profiles

C Frainay, F Jourdan - Briefings in bioinformatics, 2017 - academic.oup.com
Untargeted metabolomics makes it possible to identify compounds that undergo significant
changes in concentration in different experimental conditions. The resulting metabolomic …

Immune cell-specific and common molecular signatures in rheumatoid arthritis through molecular network approaches

B Comertpay, E Gov - Biosystems, 2023 - Elsevier
Rheumatoid arthritis (RA) is an autoimmune disorder and common symptom of RA is chronic
synovial inflammation. The pathogenesis of RA is not fully understood. Therefore, we aimed …

Integrative omics of Lonicera japonica Thunb. Flower development unravels molecular changes regulating secondary metabolites

B Yang, Z Zhong, T Wang, Y Ou, J Tian, S Komatsu… - Journal of …, 2019 - Elsevier
Lonicera japonica Thunb. is an important medicinal plant. The secondary metabolites in L.
japonica are diverse and vary in levels during development, leading to the ambiguous …

A Multi-Omics Analysis Pipeline for the Metabolic Pathway Reconstruction in the Orphan Species Quercus ilex

C López-Hidalgo, VM Guerrero-Sánchez… - Frontiers in Plant …, 2018 - frontiersin.org
Holm oak (Quercus ilex) is the most important and representative species of the
Mediterranean forest and of the Spanish agrosilvo-pastoral “dehesa” ecosystem. Despite its …

Widely targeted metabolome and transcriptome landscapes of Allium fistulosumA. cepa chromosome addition lines revealed a flavonoid hot spot on chromosome …

M Abdelrahman, S Hirata, Y Sawada, MY Hirai… - Scientific Reports, 2019 - nature.com
Here, we report a comprehensive analysis of the widely targeted metabolome and
transcriptome profiles of Allium fistulosum L.(FF) with the single extra chromosome of shallot …

An efficient LC-MS method for isomer separation and detection of sugars, phosphorylated sugars, and organic acids

S Koley, KL Chu, SS Gill, DK Allen - Journal of Experimental …, 2022 - academic.oup.com
Assessing central carbon metabolism in plants can be challenging due to the dynamic range
in pool sizes, with low levels of important phosphorylated sugars relative to more abundant …