Evolution of bird genomes—a transposon's‐eye view

A Kapusta, A Suh - Annals of the New York Academy of …, 2017 - Wiley Online Library
Birds, the most species‐rich monophyletic group of land vertebrates, have been subject to
some of the most intense sequencing efforts to date, making them an ideal case study for …

Evolutionary analysis of a complete chicken genome

Z Huang, Z Xu, H Bai, Y Huang… - Proceedings of the …, 2023 - National Acad Sciences
Microchromosomes are prevalent in nonmammalian vertebrates [PD Waters et al., Proc.
Natl. Acad. Sci. USA 118 (2021)], but a few of them are missing in bird genome assemblies …

Sex determination and sex chromosomes in Amphibia

I Miura - Sexual Development, 2018 - karger.com
Sex chromosomes in most amphibians are homomorphic (undifferentiated) in both sexes
and are characterized by frequent turnover. This is in sharp contrast to sex chromosomes in …

Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom

M Muffato, A Louis, NTT Nguyen, J Lucas… - Nature Ecology & …, 2023 - nature.com
Ancestral sequence reconstruction is a fundamental aspect of molecular evolution studies
and can trace small-scale sequence modifications through the evolution of genomes and …

The ocean sampling day consortium

A Kopf, M Bicak, R Kottmann, J Schnetzer, I Kostadinov… - Gigascience, 2015 - Springer
Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …

Upgrading short-read animal genome assemblies to chromosome level using comparative genomics and a universal probe set

J Damas, R O'Connor, M Farré, VPE Lenis… - Genome …, 2017 - genome.cshlp.org
Most recent initiatives to sequence and assemble new species' genomes de novo fail to
achieve the ultimate endpoint to produce contigs, each representing one whole …

Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots

Z Huang, I De O. Furo, J Liu, V Peona… - Nature …, 2022 - nature.com
The karyotype of most birds has remained considerably stable during more than 100 million
years' evolution, except for some groups, such as parrots. The evolutionary processes and …

Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications

MH Weissensteiner, AWC Pang, I Bunikis… - Genome …, 2017 - genome.cshlp.org
Accurate and contiguous genome assembly is key to a comprehensive understanding of the
processes shaping genomic diversity and evolution. Yet, it is frequently constrained by …

Why do some vertebrates have microchromosomes?

K Srikulnath, SF Ahmad, W Singchat, T Panthum - Cells, 2021 - mdpi.com
With more than 70,000 living species, vertebrates have a huge impact on the field of biology
and research, including karyotype evolution. One prominent aspect of many vertebrate …

Understanding the evolution of reptile chromosomes through applications of combined cytogenetics and genomics approaches

JE Deakin, T Ezaz - Cytogenetic and Genome Research, 2019 - karger.com
Studies of reptile (nonavian reptiles) chromosomes began well over a century ago (1897)
with the initial report on the description of sand lizard (Lacerta agilis) chromosomes. Since …