[HTML][HTML] From diversity to complexity: Microbial networks in soils

K Guseva, S Darcy, E Simon, LV Alteio… - Soil Biology and …, 2022 - Elsevier
Network analysis has been used for many years in ecological research to analyze
organismal associations, for example in food webs, plant-plant or plant-animal interactions …

Climate warming enhances microbial network complexity and stability

MM Yuan, X Guo, L Wu, YA Zhang, N Xiao… - Nature Climate …, 2021 - nature.com
Unravelling the relationships between network complexity and stability under changing
climate is a challenging topic in theoretical ecology that remains understudied in the field of …

Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities

C Gao, L Xu, L Montoya, M Madera… - Nature …, 2022 - nature.com
Plant response to drought stress involves fungi and bacteria that live on and in plants and in
the rhizosphere, yet the stability of these myco-and micro-biomes remains poorly …

Networks as tools for defining emergent properties of microbiomes and their stability

KT Kajihara, NA Hynson - Microbiome, 2024 - Springer
The potential promise of the microbiome to ameliorate a wide range of societal and
ecological challenges, from disease prevention and treatment to the restoration of entire …

[HTML][HTML] Cautionary notes on the use of co-occurrence networks in soil ecology

M Goberna, M Verdú - Soil Biology and Biochemistry, 2022 - Elsevier
Soil ecology is witnessing exponential growth in the number of studies using co-occurrence
network analysis. Researchers reconstruct networks based on the co-occurrence of taxa or …

[HTML][HTML] A critical perspective on interpreting amplicon sequencing data in soil ecological research

LV Alteio, J Séneca, A Canarini, R Angel… - Soil Biology and …, 2021 - Elsevier
Microbial community analysis via marker gene amplicon sequencing has become a routine
method in the field of soil research. In this perspective, we discuss technical challenges and …

Ecology and risks of the global plastisphere as a newly expanding microbial habitat

C Li, MR Gillings, C Zhang, Q Chen, D Zhu, J Wang… - The Innovation, 2024 - cell.com
Plastic offers a new niche for microorganisms, the plastisphere. The ever-increasing
emission of plastic waste makes it critical to understand the microbial ecology of the …

Distinct mechanisms underlying assembly processes and interactions of microbial communities in two single-stage bioreactors coupling anammox with denitrification

D Wang, Q Luo, K Huang, XX Zhang - Chemical Engineering Journal, 2023 - Elsevier
Coupling anammox with denitrification processes are promising technologies for total
nitrogen removal from wastewater. However, the assembly processes and interactions of …

Phylogenetic relatedness enhances the understanding of soil microbial coexistence in alpine wetlands of the Tibetan Plateau

X Liu, C Zhang, T Yang, GF Gao, Y Shi… - Soil Biology and …, 2023 - Elsevier
Soil microorganisms, spanning diverse phylogenetic lineages, form complex ecological
networks wherein various species coexist and contribute to multiple ecosystem services …

Soil microbial subcommunity assembly mechanisms are highly variable and intimately linked to their ecological and functional traits

Q Fan, K Liu, Z Wang, D Liu, T Li, H Hou… - Molecular …, 2024 - Wiley Online Library
Revealing the mechanisms underlying soil microbial community assembly is a fundamental
objective in molecular ecology. However, despite increasing body of research on overall …