Exosite binding in thrombin: a global structural/dynamic overview of complexes with aptamers and other ligands

R Troisi, N Balasco, I Autiero, L Vitagliano… - International Journal of …, 2021 - mdpi.com
Thrombin is the key enzyme of the entire hemostatic process since it is able to exert both
procoagulant and anticoagulant functions; therefore, it represents an attractive target for the …

Unlocking precision in aptamer engineering: a case study of the thrombin binding aptamer illustrates why modification size, quantity, and position matter

MT Murray, SD Wetmore - Nucleic Acids Research, 2024 - academic.oup.com
The thrombin binding aptamer (TBA) is a prototypical platform used to understand the impact
of chemically-modified nucleotides on aptamer stability and target affinity. To provide …

AptaNet as a deep learning approach for aptamer–protein interaction prediction

N Emami, R Ferdousi - Scientific reports, 2021 - nature.com
Aptamers are short oligonucleotides (DNA/RNA) or peptide molecules that can selectively
bind to their specific targets with high specificity and affinity. As a powerful new class of …

Oligonucleotide-based approaches to inhibit dengue virus replication

K Panda, K Alagarasu, D Parashar - Molecules, 2021 - mdpi.com
Dengue fever is one of the most common viral infections affecting humans. It is an
expanding public health problem, particularly in tropical and subtropical regions. No …

Picomolar detection of thrombin with fiber-optic ball resonator sensor using optical backscatter reflectometry

T Ayupova, M Shaimerdenova, M Sypabekova… - Optik, 2021 - Elsevier
A ball resonator, positioned on the tip of an optical fiber, has been developed as a biosensor
for the prototypic detection of thrombin. The device was fabricated with a fast and repeatable …

Lighting Up the Thrombin-Binding Aptamer G-Quadruplex with an Internal Cyanine-Indole-Quinolinium Nucleobase Surrogate. Direct Fluorescent Intensity Readout …

MD Gray, PS Deore, AJ Chung… - Bioconjugate …, 2020 - ACS Publications
Fluorescent nucleobases represent an important class of molecular reporters of nucleic acid
interactions. In this work, the advantages of utilizing a noncanonical fluorescent nucleobase …

Generation of epitope-specific hCG aptamers through a novel targeted selection approach

L Ferreira, SP Flanagan, R Fogel, JL Limson - Plos one, 2024 - journals.plos.org
Human chorionic gonadotropin (hCG) is a glycoprotein hormone used as a biomarker for
several medical conditions, including pregnancy, trophoblastic and nontrophoblastic …

Serum assisted PD-L1 aptamer screening for improving its stability

Y Zhou, H Zhang, Y Ding, C Yu, H Li - Scientific Reports, 2025 - nature.com
Aptamers have shown potential for diagnosing clinical markers and targeted treatment of
diseases. However, their limited stability and short half-life hinder their broader applications …

Discovery, design, synthesis, and application of nucleoside/nucleotides

K Seley-Radtke - Molecules, 2020 - mdpi.com
For decades, nucleosides and nucleotides have formed the cornerstone of antiviral,
antiparasitic and anticancer therapeutics and have been used as tools in exploring nucleic …

Selection and application of aptamer affinity for protein purification

AP de Jesus Santos, Á Oliveira-Giacomelli… - … : Methods and Protocols, 2022 - Springer
Aptamers are affinity-based oligonucleotide ligands raised against a target molecule, which
might be of proteic or other nature. Aptamers are developed by using a reiterative in vitro …