Illuminating an ecological blackbox: using high throughput sequencing to characterize the plant virome across scales

F Maclot, T Candresse, D Filloux… - Frontiers in …, 2020 - frontiersin.org
The ecology of plant viruses began to be explored at the end of the 19th century. Since then,
major advances have revealed mechanisms of virus-host-vector interactions in various …

Coinfections in wildlife: Focus on a neglected aspect of infectious disease epidemiology

AOG Hoarau, P Mavingui, C Lebarbenchon - PLoS Pathogens, 2020 - journals.plos.org
Emerging infectious diseases represent a global and major health problem. The
understanding of biological processes involved in the transmission and evolution of …

[HTML][HTML] Emerging infectious disease prevention: Where should we invest our resources and efforts?

JH Ellwanger, V de Lima Kaminski… - Journal of infection and …, 2019 - Elsevier
Strategies focused on the prevention of emerging infectious disease outbreaks are currently
in the spotlight of discussions among researchers committed to infectious disease control. In …

Gut microbiomes of free‐ranging and captive Namibian cheetahs: Diversity, putative functions and occurrence of potential pathogens

Wasimuddin, S Menke, J Melzheimer… - Molecular …, 2017 - Wiley Online Library
Although the significance of the gut microbiome for host health is well acknowledged, the
impact of host traits and environmental factors on the interindividual variation of gut …

Taxonomy of anaerobic digestion microbiome reveals biases associated with the applied high throughput sequencing strategies

S Campanaro, L Treu, PG Kougias, X Zhu… - Scientific reports, 2018 - nature.com
In the past few years, many studies investigated the anaerobic digestion microbiome by
means of 16S rRNA amplicon sequencing. Results obtained from these studies were …

16S rRNA amplicon sequencing for epidemiological surveys of bacteria in wildlife

M Galan, M Razzauti, E Bard, M Bernard, C Brouat… - …, 2016 - Am Soc Microbiol
The human impact on natural habitats is increasing the complexity of human-wildlife
interactions and leading to the emergence of infectious diseases worldwide. Highly …

Conservation genomics reveals pesticide and pathogen exposure in the declining bumble bee Bombus terricola

N Tsvetkov, VJ MacPhail, SR Colla… - Molecular ecology, 2021 - Wiley Online Library
In recent years, many pollinators have experienced large population declines, which
threaten food security and the stability of natural ecosystems. Bumble bees are particularly …

Genotyping of Bartonella bacteria and their animal hosts: current status and perspectives

M Kosoy, C McKee, L Albayrak, Y Fofanov - Parasitology, 2018 - cambridge.org
Growing evidence demonstrates that bacterial species diversity is substantial, and many of
these species are pathogenic in some contexts or hosts. At the same time, laboratories and …

The microbial composition of bacteroidetes species in ulcerative colitis is effectively improved by combination therapy with fecal microbiota transplantation and …

D Ishikawa, T Sasaki, M Takahashi… - Inflammatory bowel …, 2018 - academic.oup.com
Background We previously reported that fresh fecal microbiota transplantation (FMT) after
triple-antibiotic therapy (amoxicillin, fosfomycin, and metronidazole [AFM]; A-FMT) …

Environmental DNA metabarcoding to detect pathogenic Leptospira and associated organisms in leptospirosis-endemic areas of Japan

Y Sato, M Mizuyama, M Sato, T Minamoto, R Kimura… - Scientific Reports, 2019 - nature.com
Leptospires, which cause the zoonotic disease leptospirosis, persist in soil and aqueous
environments. Several factors, including rainfall, the presence of reservoir animals, and …