Computational methods in drug discovery

G Sliwoski, S Kothiwale, J Meiler, EW Lowe Jr… - Pharmacological …, 2014 - Elsevier
Computer-aided drug discovery/design methods have played a major role in the
development of therapeutically important small molecules for over three decades. These …

Predicting drug metabolism: experiment and/or computation?

J Kirchmair, AH Göller, D Lang, J Kunze… - Nature reviews Drug …, 2015 - nature.com
Drug metabolism can produce metabolites with physicochemical and pharmacological
properties that differ substantially from those of the parent drug, and consequently has …

In silico ADME/T modelling for rational drug design

Y Wang, J Xing, Y Xu, N Zhou, J Peng… - Quarterly reviews of …, 2015 - cambridge.org
In recent decades, in silico absorption, distribution, metabolism, excretion (ADME), and
toxicity (T) modelling as a tool for rational drug design has received considerable attention …

MetaSite: understanding metabolism in human cytochromes from the perspective of the chemist

G Cruciani, E Carosati, B De Boeck… - Journal of medicinal …, 2005 - ACS Publications
Identification of metabolic biotransformations can significantly affect the drug discovery
process. Since bioavailability, activity, toxicity, distribution, and final elimination all depend …

SMARTCyp: a 2D method for prediction of cytochrome P450-mediated drug metabolism

P Rydberg, DE Gloriam, J Zaretzki… - ACS medicinal …, 2010 - ACS Publications
SMARTCyp is an in silico method that predicts the sites of cytochrome P450-mediated
metabolism of druglike molecules. The method is foremost a reactivity model, and as such, it …

Cytochrome P450 in silico: an integrative modeling approach

C De Graaf, NPE Vermeulen… - Journal of medicinal …, 2005 - ACS Publications
Cytochromes P450 (CYPs) constitute the most important family of biotransformation
enzymes involved in drug metabolism, playing an important role in the disposition of drugs …

Antihypertensive drugs metabolism: an update to pharmacokinetic profiles and computational approaches

A Zisaki, L Miskovic… - Current pharmaceutical …, 2015 - ingentaconnect.com
Drug discovery and development is a high-risk enterprise that requires significant
investments in capital, time and scientific expertise. The studies of xenobiotic metabolism …

[HTML][HTML] Physicochemical characterisation, molecular docking, and drug-likeness evaluation of hypotensive peptides encrypted in flaxseed proteome

D Ji, M Xu, CC Udenigwe, D Agyei - Current research in food science, 2020 - Elsevier
In this study, hypotensive peptides derived from mature flaxseed protein sequences were
predicted in silico using BIOPEP-UWM with nine proteases, three each from digestive, plant …

Modeling of interactions between xenobiotics and cytochrome P450 (CYP) enzymes

H Raunio, M Kuusisto, RO Juvonen… - Frontiers in …, 2015 - frontiersin.org
The adverse effects to humans and environment of only few chemicals are well known.
Absorption, distribution, metabolism, and excretion (ADME) are the steps of pharmaco …

Parallelization of molecular docking: a review

D Dong, Z Xu, W Zhong, S Peng - Current Topics in Medicinal …, 2018 - ingentaconnect.com
Molecular docking, as one of the widely used virtual screening methods, aims to predict the
binding-conformations of small molecule ligands to the appropriate target binding site …