The role of dynamic conformational ensembles in biomolecular recognition

DD Boehr, R Nussinov, PE Wright - Nature chemical biology, 2009 - nature.com
Molecular recognition is central to all biological processes. For the past 50 years,
Koshland's' induced fit'hypothesis has been the textbook explanation for molecular …

An introduction to NMR-based approaches for measuring protein dynamics

IR Kleckner, MP Foster - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2011 - Elsevier
Proteins are inherently flexible at ambient temperature. At equilibrium, they are
characterized by a set of conformations that undergo continuous exchange within a …

Protein dynamics and function from solution state NMR spectroscopy

M Kovermann, P Rogne, M Wolf-Watz - Quarterly reviews of …, 2016 - cambridge.org
It is well-established that dynamics are central to protein function; their importance is
implicitly acknowledged in the principles of the Monod, Wyman and Changeux model of …

Conformational selection and induced fit mechanism underlie specificity in noncovalent interactions with ubiquitin

T Wlodarski, B Zagrovic - Proceedings of the National …, 2009 - National Acad Sciences
Noncovalent binding interactions between proteins are the central physicochemical
phenomenon underlying biological signaling and functional control on the molecular level …

Assessing the potential of atomistic molecular dynamics simulations to probe reversible protein-protein recognition and binding

LA Abriata, M Dal Peraro - Scientific Reports, 2015 - nature.com
Protein-protein recognition and binding are governed by diffusion, noncovalent forces and
conformational flexibility, entangled in a way that only molecular dynamics simulations can …

[图书][B] Protein folding, binding and energy landscape: A synthesis

SQ Liu, DY Tan, KQ Zhang, XL Ji, Y Tao, YX Fu - 2012 - researchgate.net
Protein folding and molecular recognition and binding provide the basis for life on earth. The
native 3D structure of a protein is necessary for its biological function; and the …

Recent advances in measuring the kinetics of biomolecules by NMR relaxation dispersion spectroscopy

D Ban, CA Smith, BL de Groot, C Griesinger… - Archives of biochemistry …, 2017 - Elsevier
Protein function can be modulated or dictated by the amplitude and timescale of
biomolecular motion, therefore it is imperative to study protein dynamics. Nuclear Magnetic …

Cys-Ph-TAHA: a lanthanide binding tag for RDC and PCS enhanced protein NMR

F Peters, M Maestre-Martinez, A Leonov… - Journal of biomolecular …, 2011 - Springer
Abstract Here we present Cys-Ph-TAHA, a new nonadentate lanthanide tag for the
paramagnetic labelling of proteins. The tag can be easily synthesized and is …

Long‐Lived States to Monitor Protein Unfolding by Proton NMR

A Bornet, P Ahuja, R Sarkar, L Fernandes… - …, 2011 - Wiley Online Library
The relaxation of long‐lived states (LLS) corresponds to the slow return to statistical thermal
equilibrium between symmetric and antisymmetric proton spin states. This process is …

Ensemble-based interpretations of NMR structural data to describe protein internal dynamics

AF Ángyán, Z Gáspári - Molecules, 2013 - mdpi.com
NMR spectroscopy is the leading technique to characterize protein internal dynamics at the
atomic level and on multiple time scales. However, the structural interpretation of the …