Using high-throughput molecular dynamics simulation to enhance the computational design of kemp elimination enzymes

P Wang, J Zhang, S Zhang, D Lu… - Journal of Chemical …, 2023 - ACS Publications
Computational enzyme design has been successfully applied to identify new alternatives to
natural enzymes for the biosynthesis of important compounds. However, the moderate …

Cloning and expression heterologous alanine dehydrogenase genes: Investigation of reductive amination potential of L-alanine dehydrogenases for green synthesis …

Ğ Demir, J Valjakka, O Turunen, F Aktaş, B Binay - Heliyon, 2024 - cell.com
Unnatural amino acids (UAAs) offer significant promise in a wide range of applications,
including drug discovery, the custom design of peptides and proteins, and their utility and …

Design Glutamate Dehydrogenase for Nonaqueous System by Motifs Reassembly and Interaction Network Analysis

Q Zhang, Y Chen, L Duan, L Dong… - Journal of Agricultural …, 2024 - ACS Publications
Glutamate dehydrogenases (GDH) serve as the key regulated enzyme that links protein and
carbohydrate metabolism. Combined with motif reassembly and mutation, novel GDHs were …

Combined active pocket and hinge region engineering to develop an NADPH-dependent phenylglycine dehydrogenase

X Yin, Y Zeng, J Chen, L Liu, Z Gao - Bioorganic Chemistry, 2022 - Elsevier
NADPH-dependent amino acid dehydrogenases (AADHs) are favorable enzymes to
construct artificial biosynthetic pathways in whole-cell for high-value noncanonical amino …

Design of motifs interfacial interactions by co‐evolved analysis of D‐amino acid dehydrogenase for stability enhancement

Z Ji, Q Zhang, L Duan, L Dong, S Wang - AIChE Journal, 2023 - Wiley Online Library
To design D‐amino acid dehydrogenase (DAADH) for enhanced stability, the interactions of
the subunit interfaces of DAADH were analyzed. Interaction network analysis of DAADH …