Transcriptional termination in mammals: Stopping the RNA polymerase II juggernaut

NJ Proudfoot - Science, 2016 - science.org
BACKGROUND Genes correspond to single transcription units, starting from the promoter
and ending at the terminator. Terminating gene transcription is directly coupled to mRNA …

Coupling mRNA processing with transcription in time and space

DL Bentley - Nature Reviews Genetics, 2014 - nature.com
Maturation of mRNA precursors often occurs simultaneously with their synthesis by RNA
polymerase II (Pol II). The co-transcriptional nature of mRNA processing has permitted the …

Mitochondrial double-stranded RNA triggers antiviral signalling in humans

A Dhir, S Dhir, LS Borowski, L Jimenez, M Teitell… - Nature, 2018 - nature.com
Mitochondria are descendants of endosymbiotic bacteria and retain essential prokaryotic
features such as a compact circular genome. Consequently, in mammals, mitochondrial …

Mammalian NET-seq reveals genome-wide nascent transcription coupled to RNA processing

T Nojima, T Gomes, ARF Grosso, H Kimura, MJ Dye… - Cell, 2015 - cell.com
Transcription is a highly dynamic process. Consequently, we have developed native
elongating transcript sequencing technology for mammalian chromatin (mNET-seq), which …

BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair

E Hatchi, K Skourti-Stathaki, S Ventz, L Pinello, A Yen… - Molecular cell, 2015 - cell.com
The mechanisms contributing to transcription-associated genomic instability are both
complex and incompletely understood. Although R-loops are normal transcriptional …

Transcription termination and the control of the transcriptome: why, where and how to stop

O Porrua, D Libri - Nature reviews Molecular cell biology, 2015 - nature.com
Transcription termination occurs when the polymerase is released after a transcription event,
thus delimitating transcription units; however, the functional importance of termination …

R-loops induce repressive chromatin marks over mammalian gene terminators

K Skourti-Stathaki, K Kamieniarz-Gdula, NJ Proudfoot - Nature, 2014 - nature.com
The formation of R-loops is a natural consequence of the transcription process, caused by
invasion of the DNA duplex by nascent transcripts. These structures have been considered …

Effects of transcription elongation rate and Xrn2 exonuclease activity on RNA polymerase II termination suggest widespread kinetic competition

N Fong, K Brannan, B Erickson, H Kim, MA Cortazar… - Molecular cell, 2015 - cell.com
The torpedo model of transcription termination asserts that the exonuclease Xrn2 attacks the
5′ PO 4-end exposed by nascent RNA cleavage and chases down the RNA polymerase …

Structural basis for RNA surveillance by the human nuclear exosome targeting (NEXT) complex

MR Puno, CD Lima - Cell, 2022 - cell.com
RNA quality control relies on co-factors and adaptors to identify and prepare substrates for
degradation by ribonucleases such as the 3′ to 5′ ribonucleolytic RNA exosome. Here …

A two-layered targeting mechanism underlies nuclear RNA sorting by the human exosome

G Wu, M Schmid, L Rib, P Polak, N Meola, A Sandelin… - Cell Reports, 2020 - cell.com
Degradation of transcripts in human nuclei is primarily facilitated by the RNA exosome. To
obtain substrate specificity, the exosome is aided by adaptors; in the nucleoplasm, those …